Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    35   0.046
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    29   2.3  
09_02_0226 - 6007656-6008063,6012166-6012678                           28   5.2  
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    27   6.9  
07_03_1165 - 24459156-24460139                                         27   6.9  
03_04_0134 - 17593449-17594702                                         27   6.9  
02_02_0151 - 7220335-7220819,7220933-7223507                           27   6.9  

>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 419 LKEHIETIHKRASYVCP--ECNKEFVRRSHVTRHM 517
           LK+H+++     S++CP  +C   ++R+ H+ RHM
Sbjct: 75  LKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHM 109



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 416 VLKEHIETIHKRASYVCPECNKEFVRRSHVTRHM 517
           + K + E +     + C EC   F + +H+ +HM
Sbjct: 46  IYKSNGEKVVHEGDHTCQECGASFQKPAHLKQHM 79


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 419 LKEHIETIHKRASYVC--PECNKEFVRRSHVTRH 514
           L++H   +H    Y+C  P C K+FV  S + RH
Sbjct: 104 LRKHAH-VHNERQYICQEPGCGKKFVDSSKLKRH 136


>09_02_0226 - 6007656-6008063,6012166-6012678
          Length = 306

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 383 TKSKIWCPNETVLKEHIETIHKRASYVCPECNKEFVRRSHVTRHM 517
           TK K W P  T +   I   H    + CP C K F R +++  HM
Sbjct: 136 TKGKYWIPTPTQIL--IGPTH----FACPVCCKTFSRYNNLQMHM 174


>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = +2

Query: 284 YCCKECGXXXXXXXSYLQHIELNHSTLPNSVACTKSKIWCPNETVLKEHIETIHKRASYV 463
           Y C++C        +Y  H+   H      V+  + K    +  V K     I K   + 
Sbjct: 312 YECQQCNLTFHGQSAYAHHLITFHK-----VSSKRRK----SNKVSKFGEPVIGKDGKFE 362

Query: 464 CPECNKEFVRRSHVTRHM 517
           CP CNK F  +S    H+
Sbjct: 363 CPVCNKTFEEQSRYFGHI 380


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 446 KRASYVCPECNKEFVRRSHVTRHM 517
           + AS+ C  CNKEF  R  V  HM
Sbjct: 109 REASFPCHLCNKEFGSRKAVHGHM 132


>03_04_0134 - 17593449-17594702
          Length = 417

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 434 ETIHKRASYVCPECNKEF 487
           +T+ K   +VCP C+KEF
Sbjct: 347 KTVKKATKFVCPICSKEF 364


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 503 HENVLQILCCILGIHTKL 450
           H N++ +LCCI G  TKL
Sbjct: 736 HINIIDLLCCISGDDTKL 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,661
Number of Sequences: 37544
Number of extensions: 219890
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)