Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77300.1 68414.m09002 SET domain-containing protein similar t...    31   0.62 
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR...    29   1.4  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    29   2.5  
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall...    28   4.4  
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ...    28   4.4  
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro...    28   4.4  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    27   5.8  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    27   5.8  
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR...    27   7.7  
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    27   7.7  
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ...    27   7.7  

>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 39   GSKNKKLKSSNADQSIDIKQEVNSGRVYVCTMCKKSCDEDKWESHVEIC 185
            G K+    + N ++ ID   + N GR ++   C+ +C  +KW  + EIC
Sbjct: 1076 GQKHFYFMTLNGNEVIDAGAKGNLGR-FINHSCEPNCRTEKWMVNGEIC 1123


>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 397  YFTFCASNTIR*CGVIQFYV 338
            YF FC SN I+ CGV   YV
Sbjct: 1196 YFKFCCSNRIKECGVRLLYV 1215


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 425 EHIETIHKRASYVCPECNKEFVRRSHV 505
           +H+E   KR  Y CP CN EF R  HV
Sbjct: 98  KHLEG--KRYYYFCPLCNLEFHRGCHV 122


>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
           targeted (GFA2) 99.8% identical to mitochondrially
           targeted DnaJ protein GFA2 [Arabidopsis thaliana]
           GI:21429604; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 456

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 21  GKGRPPGSKNKKLKSSNADQSIDIKQEVNSGRVYVCTMCKK 143
           G+G PPG+K +K K+ N      +++    G + + T C+K
Sbjct: 243 GQGVPPGTKREKCKACNGSGMTSLRR----GMLSIQTTCQK 279


>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 694

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 96  QEVNSGRVYVCTMCKKSCDEDKWESHVEICRISSNI 203
           ++  SG+ Y C +C+   D  KW    E C I+ ++
Sbjct: 580 EDTTSGQ-YWCEICESKLDASKWFYTCEFCSITLHV 614


>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain;  identical to SAC domain protein 2
           (SAC2) GI:31415720
          Length = 808

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 459 YEALLCIVSMCSFRTVSFGHHILLFVQATLLGNVE 355
           Y+ LLC V +      S+ +HI+  +Q  L  NVE
Sbjct: 154 YKRLLCTVDLTKDFFFSYSYHIMHTLQRNLSNNVE 188


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 442  YCLYVFLQNSFIWTPYFTFCASNTIR*CGVIQFYV 338
            +C + F          F FC SN I+ CGV   YV
Sbjct: 1317 FCSFKFESEMTFNDVEFKFCCSNRIKECGVRLMYV 1351


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  SKNKKLKSSNADQSIDIKQEVNSGRVYVCTMCKKSCDED 158
           + N    S N DQ+ D+K  +  G V  C  C K C ++
Sbjct: 92  ANNDNAASQNPDQNCDVKPALPKGVVRGCEEC-KDCQKE 129


>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1404

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 433  YVFLQNSFIWTPY-FTFCASNTIR*CGVIQFYV 338
            Y +L++   +    F FC SN I+ CGV   YV
Sbjct: 1283 YRYLESEMTFNDVEFKFCCSNRIKECGVRLMYV 1315


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 480 LLHSGHTYEALLCIVSMCSF 421
           +L SG TYE+ LCI   C F
Sbjct: 617 MLASGKTYESSLCIRKACGF 636


>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
           contains multiple zinc finger domains: PF00096: Zinc
           finger, C2H2 type
          Length = 412

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 452 ASYVCPECNKEFVRRSHVTRHM 517
           +++ C EC  EF + +H+ +HM
Sbjct: 64  SNHTCQECGAEFKKPAHLKQHM 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,457,833
Number of Sequences: 28952
Number of extensions: 195262
Number of successful extensions: 711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)