Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.42 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   0.73 
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    27   1.3  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   5.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   5.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.8  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 254 LLHAQLMYERWRREAHAERNRRLLGRCRQVRALELRNQALAERVRALTRERD 409
           LLH   + ER + E +A +  + L +  Q R +   ++ LAER R ++   D
Sbjct: 740 LLHVNSLAERLKGELNASKGEKDLRKRTQERLISENDKLLAERERLMSLVSD 791


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 140 DDTARQGESSTPCERLETY-LAELYAGRTCSSSGDDQVALLHAQLMY 277
           D  +R  ESS+P    E+  L +L +    S+S DD+VA L  QL+Y
Sbjct: 513 DTISRSSESSSPINESESNSLLKLQSDFKFSNS-DDRVAWLEEQLLY 558


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 29  PATGTPVAARRSVAVQTVDLWPEPYEFIIADFYRTLPDDTAR---QGESSTPCER-LETY 196
           PA GTP+    S     +  +PE   F  A+  RTLPD + +   +GE     E  +E +
Sbjct: 179 PAKGTPLPPI-SPKTNVLARYPETTTFYRAEVIRTLPDGSCKLRFEGEEEVGKETVVERH 237

Query: 197 LAELYAG 217
           L   Y G
Sbjct: 238 LVLEYNG 244


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 125 YRTLPDDTARQGESSTPCERLETYLAELYAGRTCSSSGDDQVALLHAQLMYERWRREAHA 304
           Y T  + ++     S+P   +    +   A  T  S G  +    +++   +  +R++  
Sbjct: 423 YSTSQEPSSNANNQSSPTSSINGKASSESANGTSYSKGSSR---RNSKNETDEEKRKSFL 479

Query: 305 ERNRRLLGRCRQVRALELRN-QALAE 379
           ERNR+   +CRQ +   L N QA  E
Sbjct: 480 ERNRQAALKCRQRKKQWLSNLQAKVE 505


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
 Frame = +2

Query: 68  AVQTVDLWPEPYEFIIADFYRTLPDDTARQGES-----STPCERLETYLAELYAGRTCSS 232
           AV +VD  P   EF+   + +T+     R+G S     +   +R+      + A    S 
Sbjct: 275 AVMSVDFSPTGQEFVSGSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSG 334

Query: 233 SGDDQVALLHAQLMYERWRREAHAERNRRLLGRCRQ 340
           S D  V L  A+       R    E   + L   R+
Sbjct: 335 SDDSNVRLWRARASSRASIRSTREENRLKYLDSLRE 370



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 227 SSSGDDQVALLHAQLMYERWRREAH 301
           S SGD  V L  A    ERW  +AH
Sbjct: 82  SGSGDGAVKLWDASERCERWTSKAH 106


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 38   GTPVAARRSVAVQTVDLWPEPYEFIIADFYRTLPDDTARQGESS 169
            G PV    +VA    D++ EPY+  +    ++  D  AR G SS
Sbjct: 2699 GNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSFGDSFAR-GTSS 2741


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 263 AQLMYERWRREAHAERNRR 319
           +++ Y RW+RE   ER++R
Sbjct: 8   SEVEYSRWKRERSPERSQR 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,000
Number of Sequences: 5004
Number of extensions: 22395
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)