Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 33 0.14
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 32 0.24
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830 29 3.0
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 3.0
11_04_0414 + 17386806-17387936 28 4.0
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 28 5.2
12_01_1033 + 10629897-10632311,10633874-10633879 27 6.9
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 27 9.1
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 27 9.1
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 224 CSSSGDDQVALLHAQLMYE-RWRREAHAERNRRLLGRCRQVRALELRNQALAERVRALT 397
C + + L A L Y+ WRR R+L R +AL++ + L ERV LT
Sbjct: 851 CHRDNSNYLKLKRAALTYQCAWRRRVARRELRQLRMAARDTQALKVAKEKLEERVEELT 909
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 315 RFLSACASRRHRSYMSCACR-SATWSSPLEEQVRPAYSSAKYVSRRSQGVLDS 160
R +++CA RSY+ CR SA +P QV P+Y S K + G LDS
Sbjct: 110 RQINSCAISP-RSYLQRKCRLSAALDTPRHTQVYPSYGSPKIQKKIFGGNLDS 161
>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
Length = 160
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 230 RSKSGPRTAPLNMSRGVRKGY*THPGEQCRRV 135
R +S PRT+P S G GY P C +V
Sbjct: 125 RGRSIPRTSPSGSSMGFTNGYLRVPSRSCLKV 156
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 231 EEQVRPAYSSAKYVSRRSQGVLDSPWRAVSSG 136
EE+ A+SS + V RS GVL WR + G
Sbjct: 681 EEKFNYAHSSLRNVIERSFGVLKMKWRMLEKG 712
>11_04_0414 + 17386806-17387936
Length = 376
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 3 AGLPVPRGVLRPGLRSPP 56
A LP PR V RPG SPP
Sbjct: 132 AALPSPRAVARPGTCSPP 149
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 68 RQSDGRRPESRSQDAARYREPR 3
R+S GRRP R +DAA EPR
Sbjct: 14 RRSWGRRPTRRGEDAAAGDEPR 35
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 58 SLCRRTDGRPLAGTVRVHNRRLL*NITRRHCS 153
+L + DG PLA ++ R L N+T RHC+
Sbjct: 85 TLMAKCDGLPLALVSVANHLRCLGNLTGRHCA 116
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 242 DQVALLHAQLMYERWRREAHAERNRRLLGRCRQVRALELRNQALAERVRALTRERDEL 415
++ +LH +LM ++ + + + + RAL +R+Q +ERV+ L R ++L
Sbjct: 612 ERARVLHDKLMSPEKKKRSALDMKKE--AEEKHARALRIRSQLESERVQRLQRTSEKL 667
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 215 GRTCSSSGDDQVALLHAQLMYERWRREAHAERNRRLL 325
G+TC G++ LHA+ + E +R+ + N+R L
Sbjct: 460 GKTCREIGNEYFNELHARSLIETYRKPVCWDINKRKL 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,623
Number of Sequences: 37544
Number of extensions: 207674
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -