Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22) 29 2.3
SB_42296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1) 29 3.1
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 5.4
SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6) 27 7.1
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0) 27 9.4
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33) 27 9.4
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 245 QVALLHAQLMYERWRREAHAERNRRLLGRCRQVRALELRNQALAERVRALTRERDEL 415
QV LLH QL+YER + E HA RNRRL+G+ + + QA+ + +R + EL
Sbjct: 722 QVQLLHHQLLYERHKCEQHAIRNRRLIGKTFKAVQYQEELQAIKDHLRLQEDKMREL 778
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/88 (28%), Positives = 39/88 (44%)
Frame = +2
Query: 152 RQGESSTPCERLETYLAELYAGRTCSSSGDDQVALLHAQLMYERWRREAHAERNRRLLGR 331
R+ E ER + ++ E SS GD A + YE ++ H E
Sbjct: 293 REREKKDTSERFDVFIDE-------SSPGDRFAAEVDIDKDYEI--QQTHRELRTEYNHV 343
Query: 332 CRQVRALELRNQALAERVRALTRERDEL 415
Q+++LEL N + E+ +L +ERD L
Sbjct: 344 FNQLKSLELENGQMKEQFDSLIKERDAL 371
>SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)
Length = 667
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 303 ACASRRHRSYMSCACRSATWSSPLEEQVRPAYSS 202
ACA++ S +CAC SA E Q P SS
Sbjct: 268 ACANKADNSGYTCACASAYTGIECESQAHPCDSS 301
>SB_42296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 239 DDQVALLHAQLMYERWRREAHAERNRRLLGRCRQVRALELRNQA 370
D QV H QL + R+ E+ R + RQV A RN++
Sbjct: 35 DKQVEKYHNQLTLKEGRKYGRVEKGRLFPTKFRQVAASSFRNES 78
>SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)
Length = 370
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 287 RREAHAERNRRLLGRCRQVRALELRNQALAERVRALTR 400
R ++ A R RR+ R R+ R L +AL+ RVRA R
Sbjct: 62 RVKSQASRIRRIRNRGRRARRLSSIRRALSRRVRARRR 99
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 89 RGRPSVRRQSDGRRPESRSQDAARYREPR 3
R +PS R + RRPES+S ++ R RE R
Sbjct: 58 RNKPSSRTELQDRRPESQSSESHR-RESR 85
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Frame = +2
Query: 83 DLWPEPYEFIIADFYRTLPDDTARQGESSTPCERLETYLAELYAGRTC------SSSGDD 244
D + Y I A+ +T D Q + R E YL +L T S G +
Sbjct: 1222 DHFKNEYALIQAEKRKTKEDILNLQNDIREKDRRCEMYLKDLRERETAIEWLKVSKGGLE 1281
Query: 245 QVAL-LHAQLMYERWRREAHAERNRRL 322
Q L + +L E+W+ E+H +R + L
Sbjct: 1282 QELLAVKKELEAEKWKSESHQDRIQEL 1308
>SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6)
Length = 517
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 164 SSTPCERLETYLAELYAGRTCSSSGDDQVALLHAQLMYERWRREAHAERNRRLLGRCRQV 343
+ST E + LAE +T GDD V + ++EAH E+N L RC +V
Sbjct: 179 NSTVDEWVRGQLAEQIKRQTHELPGDDAV---------QEAQQEAHKEKNEYLKSRCAEV 229
Query: 344 RA 349
++
Sbjct: 230 KS 231
>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 152 EQCRRVMFYRSRRL*TRTVPARGRPSVRRQSDGRRPESRSQDAA 21
E+ + + Y + R P R + RR +DG RPES S D++
Sbjct: 195 ERNKHLAVYTEQDAKGRARPTSAR-AARRVTDGERPESTSSDSS 237
>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 483
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 20 ARRPATGTPVAARRSVAVQTVDLWPEPYEFIIADFYRTLPDDT 148
A+ T P + LWPE + + DFY L D+T
Sbjct: 56 AKNMLTVNPTTTFPTHTTFVTGLWPESHGIVANDFYDPLYDET 98
>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 278 ERWRREAHAERNRRLLGRCRQVRALELRN 364
E RR+ ERN+ +CRQ R +RN
Sbjct: 97 EEERRKLRRERNKVAASKCRQKRKQHVRN 125
>SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)
Length = 663
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 215 GRTCSSSGDDQVALLHAQLMYERWRREAHAERNRRLLGRCRQVRALELR 361
G C+ SG VA + ++++RW R + ++L RCR ++R
Sbjct: 412 GAFCALSGVMCVAPI-LPIIFDRWSRFNRLDHECKMLDRCRMQETSDVR 459
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 92 ARGRPSVRRQSDG-RRPESRSQDAARYREPR 3
+RGR RR+ +G RRP S + + R EP+
Sbjct: 639 SRGRSPGRREREGERRPRSAERQSRRQDEPK 669
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,746
Number of Sequences: 59808
Number of extensions: 210612
Number of successful extensions: 759
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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