Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65780.1 68418.m08277 branched-chain amino acid aminotransfer...    27   5.8  
At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin ...    27   5.8  

>At5g65780.1 68418.m08277 branched-chain amino acid aminotransferase
           5 / branched-chain amino acid transaminase 5 (BCAT5)
           nearly identical to SP|Q9FYA6 Branched-chain amino acid
           aminotransferase 5, chloroplast precursor (EC 2.6.1.42)
           (Atbcat-5) {Arabidopsis thaliana}; contains Pfam
           profile: PF01063 aminotransferase class IV
          Length = 415

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 306 SACASRRHRSYMSCACRSATWSSPL 232
           SA AS  HR+Y+ CA R+AT ++ L
Sbjct: 4   SAVASGFHRNYILCASRAATSTTRL 28


>At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin
           storage protein / NWMU2-2S albumin 4 identical to
           SP|P15460
          Length = 166

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
 Frame = -3

Query: 333 QRPSRRRFLSACASRRHRSYMSCAC---RSATWSSPLE------EQVRPAYSSAKYV 190
           + P RR+ L  C S   +    C C   R A  +   +      EQVR  Y +AKY+
Sbjct: 87  ENPQRRQLLQKCCSELRQEEPVCVCPTLRQAAKAVRFQGQQHQPEQVRKIYQAAKYL 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,244,418
Number of Sequences: 28952
Number of extensions: 132345
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)