Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F01f
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 31 0.66
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12) 28 3.5
SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094) 28 3.5
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 28 4.6
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0) 28 4.6
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 27 8.1
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46) 27 8.1
>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 63.7 bits (148), Expect = 8e-11
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2
Query: 314 QGQPAQGPCAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNN 442
QGQ Q PC +E++QF+ECAQ D+++C GFNEALRQCK+ N
Sbjct: 108 QGQQ-QNPCQYELQQFVECAQNNSDMNMCQGFNEALRQCKLYN 149
>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 94 SSCGSIDPGYDSSSTSAALAIRADGCHGWWR--SCRIGCGSC 213
S C I+P + + S +L C W+ SC +GCGSC
Sbjct: 46 SKCLPINPCQNGGTCSESLGTYRCNCMSGWQGLSCEVGCGSC 87
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 30.7 bits (66), Expect = 0.66
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 252 EAASQPSNSKQLLQLKPTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVNA 431
E A+Q +K L+ P+IN R L H+ R S N+ T H A LY
Sbjct: 1258 EIAAQEEIAKPDLESLPSINDRRQSLGGHSHRRRSTVLNLDTRRGTLHQREAQCLLYFQR 1317
Query: 432 K 434
K
Sbjct: 1318 K 1318
>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 30.3 bits (65), Expect = 0.87
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 300 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKL 419
P I+T D LKD A+GR +NS N L + + A+M L
Sbjct: 748 PYIHTPDDSLKDTAKGRENNSINSLPLDISQNREKAAMGL 787
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 221 YQPHDPQPILQLRHQPWQPS 162
Y P P +LRHQPW+PS
Sbjct: 1016 YLPEKPAACDRLRHQPWKPS 1035
>SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)
Length = 303
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 314 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 445
+ QP GP A + + C +Q+HD LC N+ +C H
Sbjct: 213 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 258
>SB_28743| Best HMM Match : PCI (HMM E-Value=0.00094)
Length = 322
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 300 PTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVN 428
P + + L DH + ++++ +L+ + H+++++ KLY N
Sbjct: 175 PELQEFSTMLMDHQKAKTADGSTILDRAVIEHNLLSASKLYNN 217
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 314 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEALRQCKVNNH 445
+ QP GP A + + C +Q+HD LC N+ +C H
Sbjct: 195 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 240
>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 13 NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGC 171
NHA +++ + +SK++C PAK + P Y SST I +GC
Sbjct: 233 NHA-LKELWRYLCRSSKKTCDPAKPAKIPFRNTTPSYLLSSTRQQAGIVNEGC 284
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 25 TRKISKPSTSASKESCSPAK*CTSSC 102
TR+ +P +S E +PA CTSSC
Sbjct: 715 TRRRHRPIEGSSSEPDTPASSCTSSC 740
>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 647
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 278 AVAGLARCFHHH*TYLLEHYQPHDPQPILQLRHQPWQPSARIARAAEV 135
A++ + R L + QP P +L L P + +IARAAEV
Sbjct: 31 AISSVDRALKSSIRKLFRNTQPRSPSDLLALFRFPSPEAQQIARAAEV 78
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 13 NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDP 117
N S RK PS+ S +S P+ CT S + P
Sbjct: 917 NFPSPRKTRTPSSHQSPQSAPPSSPCTPSSSTAPP 951
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 34 ISKPSTSASKESCSPAK*CTSSCGS 108
+SKPS S+S E+C+P TSS G+
Sbjct: 1743 MSKPSVSSSGEACTPLFTDTSSFGT 1767
>SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 218 QPHDPQPILQLRHQPWQPSARIARAAEVELLS*PGSMEPHELVHYL-AGEQLSFEALVEG 42
+P P P L P P+ARI AA + +L E H ++ + AG Q +F+ E
Sbjct: 50 KPLAPHPKLLFGPGPSNPNARIYNAAAMPMLG-HFQKEFHNILDEIKAGLQYAFQTNNEY 108
Query: 41 LLIF 30
L+F
Sbjct: 109 TLVF 112
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 40 KPSTSASKESCSPAK*CTSS--CGSIDPGYDSSSTSAALAIRADGCHGWW 183
K S + C+ CT+ C + DPGYD +S+ A DG G W
Sbjct: 523 KSCPSIGGKECAGHGVCTNEGKC-ACDPGYDIASSCAKAYSPRDGSWGKW 571
>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
Length = 335
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 380 QHDLSLCDGFNEALRQCKVNNH 445
QHD C +N R+CK +H
Sbjct: 293 QHDRGNCPAYNAICRRCKAKHH 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,088
Number of Sequences: 59808
Number of extensions: 226521
Number of successful extensions: 2767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2762
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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