Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F01f
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19420.2 68417.m02858 pectinacetylesterase family protein con...    28   3.8  
At4g19420.1 68417.m02857 pectinacetylesterase family protein con...    28   3.8  
At1g30130.2 68414.m03683 expressed protein similar to hypothetic...    27   5.0  
At1g30130.1 68414.m03682 expressed protein similar to hypothetic...    27   5.0  
At3g05910.1 68416.m00666 pectinacetylesterase, putative similar ...    27   6.6  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    27   8.8  
At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase fa...    27   8.8  

>At4g19420.2 68417.m02858 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 309

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 IDPGYDSSSTSAALAIRADGCHGWWRSCRIGCGSC 213
           ++  YDS      LA RA   +G W+SC++   +C
Sbjct: 263 LNAAYDSWQIKNILAPRAADPYGKWQSCQLDIKNC 297


>At4g19420.1 68417.m02857 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 397

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 IDPGYDSSSTSAALAIRADGCHGWWRSCRIGCGSC 213
           ++  YDS      LA RA   +G W+SC++   +C
Sbjct: 263 LNAAYDSWQIKNILAPRAADPYGKWQSCQLDIKNC 297


>At1g30130.2 68414.m03683 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 100 CGSIDPGYDSSSTSAALAIRADGCHGWWRSCRIGCGSCGW 219
           C  +D G DS  T+    ++ DGC   +  CR       W
Sbjct: 270 CPGLD-GSDSDKTNKFDGLKGDGCSSSFGGCRFAWRDANW 308


>At1g30130.1 68414.m03682 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 100 CGSIDPGYDSSSTSAALAIRADGCHGWWRSCRIGCGSCGW 219
           C  +D G DS  T+    ++ DGC   +  CR       W
Sbjct: 270 CPGLD-GSDSDKTNKFDGLKGDGCSSSFGGCRFAWRDANW 308


>At3g05910.1 68416.m00666 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 415

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 109 IDPGYDSSSTSAALAIRADGCHGWWRSCRIGCGSC 213
           ++  YD+    +++A  +    G+W  CR+  G C
Sbjct: 288 VNAAYDTWQIQSSIAPTSADPSGFWHDCRLNHGKC 322


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 19  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 141
           A++  +S+PS S+S  S SP +   +   ++DP   +++ S
Sbjct: 15  AASEVVSEPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGS 55


>At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 649

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 252 EAASQPSNSKQLLQLKPTINTRDSRLKDH 338
           E A+  + S Q+L++ PT+++   +L+DH
Sbjct: 319 EHAANENRSSQILEVFPTLSSLPMQLRDH 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,615,065
Number of Sequences: 28952
Number of extensions: 155683
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)