Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314E12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 129 2e-31
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.32
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 28 0.73
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 5.2
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 5.2
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.0
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 25 9.0
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 129 bits (312), Expect = 2e-31
Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 38/210 (18%)
Frame = +1
Query: 1 KLNSHIKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
K+N + + N+ILVPY+K HV YH WMK+EELQ+LT SEPL L++EY+MQ +W DE
Sbjct: 2 KINQNTTVDCGNLILVPYQKCHVLKYHNWMKNEELQELTCSEPLTLDEEYQMQASWSTDE 61
Query: 181 DKCTFIIL--DKD------IFNNTAFDEIDAMIGDTNIFITD------------------ 282
DK TFI+L + D I ++ +++MIGD N+F+T+
Sbjct: 62 DKLTFIVLLNENDEAKKPSILDHVKAHSVESMIGDVNMFLTEEYADGIEEFDDSPSDANA 121
Query: 283 ----KEL---AIGEIEIMIAEPSARGKKRGWEAVKLMLLY----GI-KYIKIQTFEAKIS 426
KE +GE+E+MIAEP R K G + V L Y GI K +I + K+
Sbjct: 122 TNATKESEVHIVGELELMIAEPQNRRKGYGTKIVDAFLHYVESSGIAKNKQILKYRVKVG 181
Query: 427 LQNVISIKMFKKLGFQEKSVSAVFQEVTLD 516
QN SI++FKKLGF + +A F V L+
Sbjct: 182 SQNKPSIRLFKKLGFSQVKYNAYFDHVELE 211
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 82 EWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDIFNN 225
E + SE+LQ+ S+ + E E++ +++ K +FI LDK + NN
Sbjct: 217 EAIASEKLQQEERSQIIKSLMEEELEINEQEEKIKHSFIDLDKTLLNN 264
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/68 (20%), Positives = 30/68 (44%)
Frame = +1
Query: 85 WMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDIFNNTAFDEIDAMIGDT 264
W K + KL E ++ Y+M + + C ++ + F+ T ++ D+
Sbjct: 848 WRKGDTPSKLVILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNATVVAELDS 907
Query: 265 NIFITDKE 288
++I D+E
Sbjct: 908 AVWILDRE 915
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 300 RNRNNDS*TISQRKEKRM-GSCQINVTLWNKVYKNT 404
+ RNN S Q++EKR+ G+C ++ L N Y N+
Sbjct: 290 QQRNNQSSNEEQKQEKRVPGTCGLS-NLGNTCYMNS 324
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +1
Query: 94 SEELQKLTASEPLNLEQEYEMQ----KTWHDDEDKCTFIILDKDIFNNTAFDEIDAMIGD 261
++EL+ L +PL Q+++ + + KC N DE++ +
Sbjct: 148 NDELKSLETGQPLYCFQDFQKKVHGPPALSEKPGKCILKDKTNAHVNKIPQDEVNYSLPQ 207
Query: 262 TNIFITDKELAIGEIE 309
NI I KEL E E
Sbjct: 208 KNITIFSKELKENEFE 223
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 90 HPFMIDRYMMFFVRNQNYICSY 25
HP I +Y ++FV + C Y
Sbjct: 23 HPCSILKYKVYFVTTDTFYCKY 44
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 340 KKRGWEAVKLMLLYGIKYIK 399
K RG++AV+++ G++YIK
Sbjct: 96 KIRGYKAVRVLFPVGVQYIK 115
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 288 VGYRRNRNNDS*TISQRK--EKRMGSCQINVTLWNKVYK 398
+ Y++N ++ S +K KR+ CQ NV +W+ +
Sbjct: 1450 IDYKKNMQYENNLDSLKKTWRKRLEGCQKNVDVWHNTLR 1488
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 169 HDDEDKCTFIILDKDIFNNTAFD 237
+ E K T +L+KDI+NN+A++
Sbjct: 161 YSQELKLTNELLEKDIYNNSAWN 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,846
Number of Sequences: 5004
Number of extensions: 35683
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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