Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4123| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)                     29   3.1  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               27   7.1  
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_4123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 250 MIGDTNIFITDKE-LAIGEIEIMIAEPSARGKKRGWEAVKLMLLYGIKYIKIQTFEAKIS 426
           M GD N+F  D + L + EIEIMIA                    GI  + +  F AKI 
Sbjct: 1   MAGDVNLFFNDPDDLHVAEIEIMIA--------------------GISKLHVNRFTAKIG 40

Query: 427 LQNVISIKMFKKLGFQEKSVSAVFQEVTL 513
             N  S+ +F KLGF + S S VF+EVTL
Sbjct: 41  HDNEPSLSLFNKLGFTKISESEVFKEVTL 69


>SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 22  IVGANIILVPYKKHHVPVYHEWMKSEELQK 111
           IVG  I+++ Y+KHH   +  W+   E  K
Sbjct: 110 IVGLAIVMIEYQKHHNRHHQHWLLDHERLK 139


>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
          Length = 506

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 214 IFNNTAFDEIDAMIGDTNIFITDKELAIGEIEIMI 318
           I N  A  +    +GDT I+ITD    +G+  I I
Sbjct: 202 IINRYAMQDGPCKVGDTTIYITDGPCKVGDTTIYI 236


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 91   KSEELQKLTAS-EPLNLEQEYEMQKTWHD-DEDKCTFIILDKDIFNNTAFDEIDAM 252
            K E +++L  S E    E+E+E ++     +E K     L KD+ NN + +E++A+
Sbjct: 920  KEELMKELVQSLEETRAEKEFERRELLLQCEEHKMQISTLQKDLENNVSAEEMEAL 975


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +1

Query: 49  PYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDIFNNT 228
           P++  H P    + ++   +++ ++ P+N   + EM+   HD+ED+ +   L +DI +  
Sbjct: 247 PHQTMH-PAMSGYNQANMQRQVMSNMPVNHSLDSEMEGDDHDNEDEGSIEKLIEDIVDR- 304

Query: 229 AFDEIDAMIGDTNIF-ITDKELAIGEIEIMIAEPSARGK 342
              ++   I D  +F      + +G    MI  P  +G+
Sbjct: 305 ---DLPQGIEDPIVFPQVSHAMPLGSQHSMIQRPGGQGQ 340


>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 40   ILVPYKKHHVPVYHEWMK-SEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDI 216
            + +P  + H P     +  SE  Q    SEP + + + E+ K   DDED+   I    ++
Sbjct: 900  VQLPETRDHEPSQRSAVSPSESTQLDLCSEPESSKDDAELMKLARDDEDEEQTITEPSEV 959

Query: 217  FNNT 228
              N+
Sbjct: 960  SGNS 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,491
Number of Sequences: 59808
Number of extensions: 240097
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)