Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314E12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004225-1|AAH04225.1| 206|Homo sapiens N-acetyltransferase 9 p... 199 6e-51
AY632082-1|AAU25819.1| 206|Homo sapiens embryo brain specific p... 199 6e-51
BC004195-1|AAH04195.1| 207|Homo sapiens N-acetyltransferase 9 p... 195 9e-50
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 33 0.61
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 33 0.61
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 33 0.61
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 33 0.61
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 31 3.2
AK056528-1|BAB71205.1| 963|Homo sapiens protein ( Homo sapiens ... 30 5.7
AC019159-1|AAX88894.1| 291|Homo sapiens unknown protein. 30 5.7
AB077881-1|BAB83897.1| 1306|Homo sapiens caspr5 protein. 30 5.7
X97668-1|CAA66258.1| 815|Homo sapiens XLRP3 protein. 29 9.9
U57629-1|AAC50481.1| 815|Homo sapiens retinitis pigmentosa GTPa... 29 9.9
AL606748-2|CAI95407.1| 815|Homo sapiens retinitis pigmentosa GT... 29 9.9
AK223491-1|BAD97211.1| 815|Homo sapiens retinitis pigmentosa GT... 29 9.9
AJ318463-1|CAC86116.1| 815|Homo sapiens retinitis pigmentosa GT... 29 9.9
>BC004225-1|AAH04225.1| 206|Homo sapiens N-acetyltransferase 9
protein.
Length = 206
Score = 199 bits (485), Expect = 6e-51
Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 KLNSHIKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
+LN + ++G ++LVPY HVP YHEWMKSEELQ+LTASEPL LEQEY MQ +W +D
Sbjct: 2 RLNQNTLLLGKKVVLVPYTSEHVPRYHEWMKSEELQRLTASEPLTLEQEYAMQCSWQEDA 61
Query: 181 DKCTFIILDKDIFN-NTAFDEIDAMIGDTNIFITD-KELAIGEIEIMIAEPSARGKKRGW 354
DKCTFI+LD + + E M+GD N+F+TD ++L +GEIE+MIAEPS RGK G
Sbjct: 62 DKCTFIVLDAEKWQAQPGATEESCMVGDVNLFLTDLEDLTLGEIEVMIAEPSCRGKGLGT 121
Query: 355 EAVKLMLLYGIKYIKIQTFEAKISLQNVISIKMFKKLGFQEKSVSAVFQEVTL 513
EAV ML YG+ + + FEAKI N SI+MF+KL F++ + S+VFQEVTL
Sbjct: 122 EAVLAMLSYGVTTLGLTKFEAKIGQGNEPSIRMFQKLHFEQVATSSVFQEVTL 174
>AY632082-1|AAU25819.1| 206|Homo sapiens embryo brain specific
protein protein.
Length = 206
Score = 199 bits (485), Expect = 6e-51
Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 KLNSHIKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
+LN + ++G ++LVPY HVP YHEWMKSEELQ+LTASEPL LEQEY MQ +W +D
Sbjct: 2 RLNQNTLLLGKKVVLVPYTSEHVPRYHEWMKSEELQRLTASEPLTLEQEYAMQCSWQEDA 61
Query: 181 DKCTFIILDKDIFN-NTAFDEIDAMIGDTNIFITD-KELAIGEIEIMIAEPSARGKKRGW 354
DKCTFI+LD + + E M+GD N+F+TD ++L +GEIE+MIAEPS RGK G
Sbjct: 62 DKCTFIVLDAEKWQAQPGATEESCMVGDVNLFLTDLEDLTLGEIEVMIAEPSCRGKGLGT 121
Query: 355 EAVKLMLLYGIKYIKIQTFEAKISLQNVISIKMFKKLGFQEKSVSAVFQEVTL 513
EAV ML YG+ + + FEAKI N SI+MF+KL F++ + S+VFQEVTL
Sbjct: 122 EAVLAMLSYGVTTLGLTKFEAKIGQGNEPSIRMFQKLHFEQVATSSVFQEVTL 174
>BC004195-1|AAH04195.1| 207|Homo sapiens N-acetyltransferase 9
protein.
Length = 207
Score = 195 bits (475), Expect = 9e-50
Identities = 97/174 (55%), Positives = 123/174 (70%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 KLNSHIKIVGANIILVPYKKHHVPV-YHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDD 177
+LN + ++G ++LVPY HVP YHEWMKSEELQ+LTASEPL LEQEY MQ +W +D
Sbjct: 2 RLNQNTLLLGKKVVLVPYTSEHVPSRYHEWMKSEELQRLTASEPLTLEQEYAMQCSWQED 61
Query: 178 EDKCTFIILDKDIFN-NTAFDEIDAMIGDTNIFITDKE-LAIGEIEIMIAEPSARGKKRG 351
DKCTFI+LD + + E M+GD N+F+TD E L +GEIE+MIAEPS RGK G
Sbjct: 62 ADKCTFIVLDAEKWQAQPGATEESCMVGDVNLFLTDLEDLTLGEIEVMIAEPSCRGKGLG 121
Query: 352 WEAVKLMLLYGIKYIKIQTFEAKISLQNVISIKMFKKLGFQEKSVSAVFQEVTL 513
EAV ML YG+ + + FEAKI N SI+MF+KL F++ + S+VFQEVTL
Sbjct: 122 TEAVLAMLSYGVTTLGLTKFEAKIGQGNEPSIRMFQKLHFEQVATSSVFQEVTL 175
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 33.1 bits (72), Expect = 0.61
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 100 ELQKLTASEPLNLEQEYEMQKTWH------------DDEDKCTFIILDKDI----FNNTA 231
EL+KL S NLE EYE ++ H +E + FI + D+ F+
Sbjct: 77 ELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILP 136
Query: 232 FDEIDAMIGDTNI---FITDKELAIGEIEIMIAEPSARGKKRGWEAV 363
D+I + D+ + I+D+E + E EI+ + PS G K G+E++
Sbjct: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESI 183
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 33.1 bits (72), Expect = 0.61
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 100 ELQKLTASEPLNLEQEYEMQKTWH------------DDEDKCTFIILDKDI----FNNTA 231
EL+KL S NLE EYE ++ H +E + FI + D+ F+
Sbjct: 77 ELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILP 136
Query: 232 FDEIDAMIGDTNI---FITDKELAIGEIEIMIAEPSARGKKRGWEAV 363
D+I + D+ + I+D+E + E EI+ + PS G K G+E++
Sbjct: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESI 183
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 33.1 bits (72), Expect = 0.61
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 100 ELQKLTASEPLNLEQEYEMQKTWH------------DDEDKCTFIILDKDI----FNNTA 231
EL+KL S NLE EYE ++ H +E + FI + D+ F+
Sbjct: 77 ELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILP 136
Query: 232 FDEIDAMIGDTNI---FITDKELAIGEIEIMIAEPSARGKKRGWEAV 363
D+I + D+ + I+D+E + E EI+ + PS G K G+E++
Sbjct: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESI 183
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 33.1 bits (72), Expect = 0.61
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 100 ELQKLTASEPLNLEQEYEMQKTWH------------DDEDKCTFIILDKDI----FNNTA 231
EL+KL S NLE EYE ++ H +E + FI + D+ F+
Sbjct: 77 ELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILP 136
Query: 232 FDEIDAMIGDTNI---FITDKELAIGEIEIMIAEPSARGKKRGWEAV 363
D+I + D+ + I+D+E + E EI+ + PS G K G+E++
Sbjct: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESI 183
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 30.7 bits (66), Expect = 3.2
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Frame = +1
Query: 100 ELQKLTASEPLNLEQEYEMQKTWH------------DDEDKCTFIILDKDI----FNNTA 231
EL+KL S LE EYE ++ H +E + FI + D+ F+
Sbjct: 77 ELRKLKFSYREKLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILP 136
Query: 232 FDEIDAMIGDTNI---FITDKELAIGEIEIMIAEPSARGKKRGWEAV 363
D+I + D+ + I+D+E + E EI+ + PS G K G+E++
Sbjct: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESI 183
>AK056528-1|BAB71205.1| 963|Homo sapiens protein ( Homo sapiens cDNA
FLJ31966 fis, clone NT2RP7007925, weakly similar to Homo
sapiens contactin associated protein (Caspr) mRNA. ).
Length = 963
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +1
Query: 85 WM-KSEELQKLTASEPLNLEQ-EYEMQKTWHDDEDKCTFIILDKDIF-NNTAFDEIDAMI 255
W+ +S E P ++Q E + ++ D + C DKD + N+T F +
Sbjct: 700 WIGRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCN-CDADKDEWTNDTGFLSFKDHL 758
Query: 256 GDTNIFITDKELAIGEIEIMIAEPSARGKKRGWEAVKLMLLYGIKYIKIQTFEAKIS 426
T I ITD + + E I G +R W AV Y+ TF A+ S
Sbjct: 759 PVTQIVITDTDRSNSEAAWRIGPLRCYGDRRFWNAVSFYT--EASYLHFPTFHAEFS 813
>AC019159-1|AAX88894.1| 291|Homo sapiens unknown protein.
Length = 291
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +1
Query: 85 WM-KSEELQKLTASEPLNLEQ-EYEMQKTWHDDEDKCTFIILDKDIF-NNTAFDEIDAMI 255
W+ +S E P ++Q E + ++ D + C DKD + N+T F +
Sbjct: 74 WIGRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCN-CDADKDEWTNDTGFLSFKDHL 132
Query: 256 GDTNIFITDKELAIGEIEIMIAEPSARGKKRGWEAVKLMLLYGIKYIKIQTFEAKIS 426
T I ITD + + E I G +R W AV Y+ TF A+ S
Sbjct: 133 PVTQIVITDTDRSNSEAAWRIGPLRCYGDRRFWNAVSFYT--EASYLHFPTFHAEFS 187
>AB077881-1|BAB83897.1| 1306|Homo sapiens caspr5 protein.
Length = 1306
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +1
Query: 85 WM-KSEELQKLTASEPLNLEQ-EYEMQKTWHDDEDKCTFIILDKDIF-NNTAFDEIDAMI 255
W+ +S E P ++Q E + ++ D + C DKD + N+T F +
Sbjct: 699 WIGRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCN-CDADKDEWTNDTGFLSFKDHL 757
Query: 256 GDTNIFITDKELAIGEIEIMIAEPSARGKKRGWEAVKLMLLYGIKYIKIQTFEAKIS 426
T I ITD + + E I G +R W AV Y+ TF A+ S
Sbjct: 758 PVTQIVITDTDRSNSEAAWRIGPLRCYGDRRFWNAVSFYT--EASYLHFPTFHAEFS 812
>X97668-1|CAA66258.1| 815|Homo sapiens XLRP3 protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 79 HEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
HE+ K+EEL+ E +N E +KT DDE
Sbjct: 637 HEFSKTEELKLEDVDEEINAENVESKKKTVGDDE 670
>U57629-1|AAC50481.1| 815|Homo sapiens retinitis pigmentosa GTPase
regulator protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 79 HEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
HE+ K+EEL+ E +N E +KT DDE
Sbjct: 637 HEFSKTEELKLEDVDEEINAENVESKKKTVGDDE 670
>AL606748-2|CAI95407.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 79 HEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
HE+ K+EEL+ E +N E +KT DDE
Sbjct: 637 HEFSKTEELKLEDVDEEINAENVESKKKTVGDDE 670
>AK223491-1|BAD97211.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator variant protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 79 HEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
HE+ K+EEL+ E +N E +KT DDE
Sbjct: 637 HEFSKTEELKLEDVDEEINAENVESKKKTVGDDE 670
>AJ318463-1|CAC86116.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 79 HEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 180
HE+ K+EEL+ E +N E +KT DDE
Sbjct: 637 HEFSKTEELKLEDVDEEINAENVESKKKTVGDDE 670
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,969,988
Number of Sequences: 237096
Number of extensions: 1151878
Number of successful extensions: 2665
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2654
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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