Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E09f
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    76   3e-15
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    29   0.29 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    29   0.38 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   2.0  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   2.7  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   3.5  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   3.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   3.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   3.5  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.1  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    24   8.1  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    24   8.1  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
 Frame = +2

Query: 5   SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 184
           S L   +  +   Y   T   LK IDA+L ++ +   +QFGY  LVGT+PFNSFLSGFIS
Sbjct: 5   SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64

Query: 185 TVSCFVLGVCLRLQVNPE------NKNEFQGLSA-ERGFADFIFAHLVLH 313
            V  FV+ V  R+ +  +      +K +   +S  +R F +F F+ LVLH
Sbjct: 65  CVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLH 114


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 301  MCKYEICK-ATFGTQPLELILVFWINL*PKTHSKNKAAY 188
            +CK  IC+  +   Q L+ ++ +WIN  P TH ++ A Y
Sbjct: 980  ICK--ICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPY 1016


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = -3

Query: 240 FSGLTCSRRHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 91
           F G+T  RRH    K    DI P       L KE+N      Q   + P+   ++R   +
Sbjct: 36  FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95

Query: 90  RYASIILSFLGV 55
           +++  I SF+GV
Sbjct: 96  KFSKRIFSFIGV 107


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 26  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVG 145
           PK+       T   L  +D YL+YI ++ +    Y   +G
Sbjct: 557 PKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 8   SLTAVIPK--LYQEYTTKTPKKLKIID 82
           +LT   PK  LY  Y++++PK  KI+D
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILD 171


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 FPI*FFLKWFYIYSKLL 198
           FP  FFL WFY++  +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 CLRLQVNPENKNEFQGLSAERGFADF 289
           C++ QV+P+  NEF   +A++    F
Sbjct: 356 CVKFQVDPDKPNEFLAGTADKRILQF 381


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 280 KATFGTQPLELILVFWINL*PKTHS 206
           K+  G QP ++ L FW+ +   THS
Sbjct: 223 KSQSGVQPAQISLAFWVFIFVFTHS 247


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 89  LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVCL 217
           L  +F+  ++ +G C +  T PF      F  T S     F+LG C+
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 23  IPKLYQEYTTKT-PKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVS 193
           IP   + +   T P+KLK+  + LF++    V+  G   ++ T   +  + G +  ++
Sbjct: 80  IPTFKETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIIN 137


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 5   SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGT 148
           +SL +  PK        T   L  +D YL+Y+ ++ +    Y   +G+
Sbjct: 641 ASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 291 MKSAKPRSALNPWN 250
           +K  +P S LNPWN
Sbjct: 64  IKVVRPSSVLNPWN 77


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 285 SAKPRSALNPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPT 139
           +AK ++A+NP N+   +     RR+     Q  +   P K   N  +PT
Sbjct: 56  AAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPT 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,661
Number of Sequences: 5004
Number of extensions: 30677
Number of successful extensions: 104
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)