SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E09f
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.87 
SB_1510| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)               28   3.5  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      27   4.6  
SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)                      27   6.1  
SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_45083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = -2

Query: 298 CKYEICKATFGTQPLELILVFWINL*PKTHSKNKAAYCRYKTT*ERIKWESADKATVAEL 119
           C Y + K+TF  + +E +  F +   P T  +   A  + +T+ E I W + +    + +
Sbjct: 43  CNYHLAKSTFSIRNVEFL--FAVRTLP-TREERITADSKLRTSFETIAWATCESTNASTI 99

Query: 118 YDRSKENIEKVCINYFKLL 62
            D    + E     + +L+
Sbjct: 100 KDEENAHGEDKSFLFIRLI 118


>SB_1510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 319 NNMQHQMCKYEICKATFGTQP-LELILVFWINL*PKTHSKNKAAYCRYKTT*ERIKWESA 143
           N  +H+   +   K  FG  P L + L+F ++       K+KA++  Y       KW++A
Sbjct: 6   NCTKHETTGFAPFKLLFGRSPRLPIDLMFGLD-----SDKDKASHSEYYK-----KWKTA 55

Query: 142 DKATVAELYDRSKENIEKVCINYFKLLRS 56
                +++   + ++ ++ CI Y K +RS
Sbjct: 56  MGQAYSQVLKTTTQSSQRNCIQYNKRVRS 84


>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
          Length = 341

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPF 157
           Y +   L AV+  GY C +  FPF
Sbjct: 170 YYYSFLLQAVVGLGYACYLAIFPF 193


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 327  LITTICNTRCANMKSAKPRSALNPWNSFLFSGLTCSRRHTPRTKQLTVD 181
            L+ TIC+   A +K  K   +  P     ++  TC+R +    KQ+T+D
Sbjct: 1136 LMCTICSKTFATLKFLKKHVSRKPHEDKPYNSTTCNRAY---RKQITLD 1181


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -3

Query: 240  FSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQQ*PNCMTAVRKI*KRYASIILSFL 61
            FSG T S+ H P+     VD    K+    K  +      C T  +KI  +Y S  + F 
Sbjct: 958  FSGKTTSKCHLPKPSDCFVDTLETKQIYEAKDDSYP----CRTGKKKI-DKYPSSHIKFS 1012

Query: 60   GVFVVYS*YNFGITAVSEDI 1
            G     +  +F I+   EDI
Sbjct: 1013 GHLSKPAPSSFDISVKLEDI 1032


>SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 273 RSALNPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKE 160
           R+ L  W   LF  L CSR      K++  + KP+ K+
Sbjct: 3   RAVLACWPLVLFLALFCSRARAENDKRIYTNKKPVYKK 40


>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 89  LFYIFLTAVIQFGYCCL-VGTFPFNSFLS 172
           LFY +L  VIQFG+  + V  FP   F +
Sbjct: 142 LFYEYLEMVIQFGFITIFVTAFPLGPFFA 170


>SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 163 RIKWESADKATVAELYDRSKENIEKV 86
           R+KW+  +K    + Y   +ENIE++
Sbjct: 222 RMKWKKDEKQKTEDCYSAHQENIEEI 247


>SB_45083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 336 PMKLITTICNTRCANMKSAKPRSALN 259
           P K+   +C  RC   ++AKP   LN
Sbjct: 74  PFKIEDYLCGDRCETFETAKPAKNLN 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,405,530
Number of Sequences: 59808
Number of extensions: 221789
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -