Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E09f
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.       140   3e-34
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...   140   3e-34
Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    28   2.3  
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   5.4  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   5.4  
AC199171-2|ABO33268.1|  297|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    27   7.1  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   7.1  
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z81124-10|CAH60752.1|  241|Caenorhabditis elegans Hypothetical p...    26   9.4  
U68256-1|AAB16971.1|  123|Caenorhabditis elegans rab8-like protein.    26   9.4  
AF106592-3|AAK21367.2|  211|Caenorhabditis elegans Rab family pr...    26   9.4  
AB112929-1|BAD07034.1|  211|Caenorhabditis elegans Rab8 protein.       26   9.4  

>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score =  140 bits (340), Expect = 3e-34
 Identities = 64/103 (62%), Positives = 78/103 (75%)
 Frame = +2

Query: 5   SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 184
           + +  V+ KL+ +Y   T  KLKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 185 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 313
           TV+ FVL  CLR+QVN EN++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score =  140 bits (340), Expect = 3e-34
 Identities = 64/103 (62%), Positives = 78/103 (75%)
 Frame = +2

Query: 5   SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 184
           + +  V+ KL+ +Y   T  KLKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 185 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 313
           TV+ FVL  CLR+QVN EN++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical
           protein F59C6.14b protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  KKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 184
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 70  KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 109


>Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical
           protein F59C6.14a protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  KKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 184
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 107 KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 146


>U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical
           protein D2096.5 protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 68  LKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFV 202
           + ++  ++F +F + V       LV TF FN FLS  +STV  FV
Sbjct: 6   VSLLSVFIFLLFSSEVE-----ALVTTFHFNGFLSCGLSTVDFFV 45


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = +2

Query: 29  KLYQEYTTKTPKKLKIID------AYLFY--IFLTAVIQFGYCCLVG 145
           K+Y E+TT T  ++ II+       YLF   + LT  + F   C++G
Sbjct: 102 KIYSEFTTNTTSEMIIIEKTLWDVPYLFIGSVMLTHYMAFSVTCMIG 148


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -3

Query: 312 CNTRCANMKSAKPRSALNPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQ 133
           C+T C  +   + +S    WN+F    L  S      +  L V+  P+KK      P   
Sbjct: 304 CSTDCKRIVEQRVKSVHKDWNNFSRLSLADSDIVRTSSNPLKVEYPPIKKFGGTNAPKSN 363

Query: 132 Q*PNCMTAVRKI*KR 88
           +  N     R+I K+
Sbjct: 364 R--NTQKTARQIPKK 376


>Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical
           protein R09A8.5 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 20  VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVI--QFGYCC 136
           V+P L+ +   KT K++  +D +L +IF   +I    GY C
Sbjct: 123 VLPALHYDNEHKTVKQMVKLDLHLIFIFFFHLILAAIGYRC 163


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 143 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 247
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 271 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 305


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 160 IKWESADKATVAELYDRSKENIEKVCINYFK 68
           I +   D+    +LY+RS++ IEK  +N  K
Sbjct: 83  ISYTDRDEGCTVKLYNRSEKYIEKTALNAMK 113


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 143 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 247
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 232 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 266


>AC199171-2|ABO33268.1|  297|Caenorhabditis elegans Hypothetical
           protein VY35H6BL.1 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 312 CNTRCANMKSAKPRSALNPWNSFLFSGLTCSRRHTPRTKQ-LTVDIKPLKK 163
           C+T C  +   + +S    WN+  FS L+ +     RT   L V+  P+KK
Sbjct: 91  CSTDCKRIVEQRVKSVHKDWNN--FSRLSLADSDIVRTSNPLKVEYPPIKK 139


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 20  VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNS--FLSGFISTVS 193
           VI  ++     +  + L+I D   F + +T    F +   V T P N+  F SG++    
Sbjct: 462 VIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP-NAIVFSSGYLKVFD 519

Query: 194 CFVLGVCLRL 223
            FV G+C+ L
Sbjct: 520 MFVSGLCVTL 529


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 112 GHTIRLLLPCRHFPI*FFLKWFYIYSKLL 198
           G +I   +PC  FPI  FL  F +YS L+
Sbjct: 137 GKSITCTVPCLPFPILPFLPVFPVYSPLV 165


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 20  VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNS--FLSGFISTVS 193
           VI  ++     +  + L+I D   F + +T    F +   V T P N+  F SG++    
Sbjct: 462 VIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP-NAIVFSSGYLKVFD 519

Query: 194 CFVLGVCLRL 223
            FV G+C+ L
Sbjct: 520 MFVSGLCVTL 529


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 113 VIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENK 244
           +IQ     ++G F    F + FI  ++ F+LG CL ++  P +K
Sbjct: 12  LIQKSEYFIIGVFLI--FRTAFIFIITGFILGYCLHVKDPPSDK 53


>Z81124-10|CAH60752.1|  241|Caenorhabditis elegans Hypothetical
           protein T21B4.15 protein.
          Length = 241

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   SSLTAVIPKLYQEYTTKTPKKLKIIDAY 88
           S  T  +PKL  + T+K PKK  +   Y
Sbjct: 206 SPTTPTVPKLVSKVTSKKPKKAPLFAKY 233


>U68256-1|AAB16971.1|  123|Caenorhabditis elegans rab8-like protein.
          Length = 123

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 190
           YLF + L      G  C++  F  +SF + FIST+
Sbjct: 7   YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41


>AF106592-3|AAK21367.2|  211|Caenorhabditis elegans Rab family
           protein 8 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 190
           YLF + L      G  C++  F  +SF + FIST+
Sbjct: 7   YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41


>AB112929-1|BAD07034.1|  211|Caenorhabditis elegans Rab8 protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 190
           YLF + L      G  C++  F  +SF + FIST+
Sbjct: 7   YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,076
Number of Sequences: 27780
Number of extensions: 171252
Number of successful extensions: 569
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)