Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E09f
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35520.1 68415.m04350 defender against cell death 2 (DAD2) id...   108   1e-24
At1g32210.1 68414.m03962 defender against cell death 1 (DAD1) id...   105   1e-23
At2g35520.2 68415.m04351 defender against cell death 2 (DAD2) id...   104   3e-23
At5g57130.1 68418.m07135 expressed protein                             29   0.94 
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati...    27   5.0  
At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati...    27   5.0  
At1g19620.1 68414.m02445 expressed protein                             27   5.0  
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi...    26   8.7  

>At2g35520.1 68415.m04350 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 115

 Score =  108 bits (260), Expect = 1e-24
 Identities = 54/94 (57%), Positives = 66/94 (70%)
 Frame = +2

Query: 32  LYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGV 211
           L+  YT  TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLSG +S +   VL V
Sbjct: 16  LHSAYTA-TPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAV 74

Query: 212 CLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 313
           CLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 75  CLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 107


>At1g32210.1 68414.m03962 defender against cell death 1 (DAD1)
           identical to defender against cell death 1 (DAD-1,
           AtDAD1) [Arabidopsis thaliana] SWISS-PROT:Q39080
          Length = 115

 Score =  105 bits (252), Expect = 1e-23
 Identities = 51/86 (59%), Positives = 62/86 (72%)
 Frame = +2

Query: 56  TPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNP 235
           TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLSG +S +   VL VCLR+QVN 
Sbjct: 23  TPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNK 82

Query: 236 ENKNEFQGLSAERGFADFIFAHLVLH 313
           ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 83  ENK-EFKDLAPERAFADFVLCNLVLH 107


>At2g35520.2 68415.m04351 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 116

 Score =  104 bits (249), Expect = 3e-23
 Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
 Frame = +2

Query: 32  LYQEYTTKTPKKLKIIDAYLFYIFLTAVIQ-FGYCCLVGTFPFNSFLSGFISTVSCFVLG 208
           L+  YT  TP  LKIID Y+ +   TA+IQ   Y  LVG+FPFNSFLSG +S +   VL 
Sbjct: 16  LHSAYTA-TPTNLKIIDLYVCFAVFTALIQQVAYMALVGSFPFNSFLSGVLSCIGTAVLA 74

Query: 209 VCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 313
           VCLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 75  VCLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 108


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 288 KSAKPRSALNPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKV 145
           K  KP S L+  N F      CSR+ +  +  L ++IK   +E+ G++
Sbjct: 731 KKRKPESDLSIENGFWMKKEVCSRQSSFNSSYLDLNIKAEDEEVEGEI 778


>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:303750 from [Pisum
           sativum]
          Length = 202

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 190
           YLF + L      G  CL+  F  +S+L  +IST+
Sbjct: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41


>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
           very strong similarity to RAB1C [Lotus corniculatus var.
           japonicus] GI:1370166; contains Pfam profile PF00071:
           Ras family
          Length = 202

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 86  YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 190
           YLF + L      G  CL+  F  +S+L  +IST+
Sbjct: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41


>At1g19620.1 68414.m02445 expressed protein
          Length = 317

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 92  FYIFLTAVIQFGYCCL 139
           + + L+AV+ FGYCCL
Sbjct: 21  YTVGLSAVVAFGYCCL 36


>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 688

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 80  DAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCF--VLGVCLR 220
           DA+++  FL  + Q GY      F ++   SG I  V C+  V+  C R
Sbjct: 588 DAFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVIAECSR 636


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,881,908
Number of Sequences: 28952
Number of extensions: 150841
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)