Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    31   0.14 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   2.2  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   6.8  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   6.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.0  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   9.0  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   9.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    25   9.0  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = +2

Query: 8   SARGRFQDDSFHQSH*YSTPY---------SRDLRPV*LENRRRVLQKVIVRILQRLS 154
           S R  F+D S H S  YS  Y          + L    LE+RRR+L+KVIVR   R+S
Sbjct: 371 SLRSIFEDSSSHSS--YSPYYVVFDILYLNGKSLVKYSLESRRRILEKVIVRESHRMS 426


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +3

Query: 111 AYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVARLHP 290
           ++F ++L+  S+  A   +     H ++  ++A+  +  L     D++LQEIY+ A++  
Sbjct: 421 SFFVKTLHAISSSSAAESSIALALHMLV--INAFQSMEKLKILTFDDSLQEIYKEAQIQS 478

Query: 291 HKCFNN 308
               +N
Sbjct: 479 GTFMSN 484


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 461 RQNFDPTNTSFLHVHLEFFLHDHPLVNEQS*AFLQRPDGSFLLIP 327
           + NF+    +  H+HL  + H H   + QS  ++  P+  F   P
Sbjct: 22  KANFESIRINLQHMHLYHYEHIHLFTSSQS--YMYHPNARFSYSP 64


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 126 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVARLHPHKCF- 302
           SL E S   + R   +    F    +++WT+I      + DE+L +  ++   +P  C  
Sbjct: 217 SLQEASRKQSERDRRQYQETFKNQSIASWTIIDQEETSSDDESLSK--EIVNSNPIMCMV 274

Query: 303 NNKIFK 320
            NK F+
Sbjct: 275 CNKNFR 280


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 ATSSCPVCRRGLLYPHFPSVLQMKL 255
           AT  CPVCRR  ++P+    L+M L
Sbjct: 239 ATQKCPVCRR-KVHPNKVICLEMML 262


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 148  SLENSYNDLLKYA 110
            SLE+ YND++KYA
Sbjct: 1012 SLEHRYNDIVKYA 1024


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 469 SSKDRTLTPQT-PVFCTSTWNFSCTIILSSTNKAELFSSVPTAVS 338
           SS   T T  T     +S+ +FS T+  SS + +  FSS PT+ S
Sbjct: 296 SSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 226 HFPSVLQMKLCKKSTRLQGCTLINASITKYSSFSGIRRK 342
           H+P  L  +LC+    + G    N+ +  Y    G+ +K
Sbjct: 226 HWPMTLVERLCRSCVLIVGQRSTNSILLVYQILDGLSKK 264


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 485 CRGDRIVKRQNFDPTNTSFLHVHLEFFLHDHPLVNEQS*AFLQRPDGSFL 336
           C GD ++    +  T+ S LH      L DH   N     F +R  G +L
Sbjct: 242 CTGDHMLINMEWGATDFSCLHSTRYDLLLDHDTPNAGRQIFEKRVGGMYL 291


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 464 KRQNFDPTNTSFLHVHLEFFLHDHPLVNEQS 372
           K  NF  +NT +L +H        PL+N +S
Sbjct: 107 KSHNFSSSNTPYLKLHRPASRAGAPLINAKS 137


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 381 VDERMIVQEKFQVDVQKTGVCGVKVLSFDDTISSAATINQYV 506
           +D R +V++ F+V   +  +C V   +     S  A+ NQ+V
Sbjct: 707 IDFRELVRDLFKVYKTRIWMCAVSGTNMSSPASINASTNQFV 748


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 78  IYGQCNLKTAGAYFKRSLYEFSNDLAVRIN 167
           I+G C     G YF+  L E     ++R+N
Sbjct: 4   IFGTCTGYMNGIYFQEGLLEIPTTKSIRMN 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,031
Number of Sequences: 5004
Number of extensions: 45356
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)