Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314E08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_7375| Best HMM Match : RVT_1 (HMM E-Value=7.6e-19) 28 4.1
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 5.4
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 5.4
SB_59092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10) 27 7.1
SB_27364| Best HMM Match : Hep_Hag (HMM E-Value=4.9e-05) 27 7.1
SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05) 27 7.1
SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_34357| Best HMM Match : UBX (HMM E-Value=0.28) 27 9.4
SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2) 27 9.4
SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_28939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 9.4
>SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +3
Query: 234 FGATDETLQEIYQVARLHPHKC---FNNKIFKLLRDQK----ETAVGTLEKSSALFVDER 392
F ++ L+ +Q+AR PH C F +++FK L + + G ++ + +++ +
Sbjct: 313 FVVANDALRVYHQIARHQPHSCDVVFYDRVFKQLCELRLRLHGRPTGPRDRGTDVYLRAK 372
Query: 393 MIVQEKFQVDVQKTGVCGVKVLSF 464
V E+F ++ + C + L+F
Sbjct: 373 HCVDERFDRAIESSLPCFCQPLTF 396
>SB_7375| Best HMM Match : RVT_1 (HMM E-Value=7.6e-19)
Length = 544
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 174 TDSHFVMSGL-SAWTLISALSFGATDETLQEIYQVARLHPHKCFNNKIF 317
T HF M L SA TL+ SF A + Y V+ H+C+ +F
Sbjct: 299 TYHHFKMESLQSALTLVKPGSFMAVLDLKDAYYSVSIAEEHRCYLRFVF 347
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 103 PPARTSKGHCTNSPTT*RSGSIMKRTATSSCPVC 204
P RT+ SP T R IMK T S PVC
Sbjct: 161 PEVRTADLCVIGSPPTCRHALIMKTTTPLSAPVC 194
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 103 PPARTSKGHCTNSPTT*RSGSIMKRTATSSCPVC 204
PPA SK P + +K +TSSCP+C
Sbjct: 34 PPA--SKEAVQALPAVEVTDKHLKELSTSSCPIC 65
Score = 22.6 bits (46), Expect(2) = 5.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 184 TSSCPVCRRGL 216
T+SCPVCR L
Sbjct: 96 TNSCPVCRHEL 106
>SB_59092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 66 LTPGIYGQCNLKTAGAYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWT-LISALSFGA 242
LT G Y N + A K + + + + + Y TDS VM+ + W+ +I +
Sbjct: 30 LTTGTY--LNYRLAERLMKPNTIDNDRNSFLAVYYTTDSR-VMTESAEWSFVIEGKKYEV 86
Query: 243 TDETLQEIYQVARLHP 290
LQ Y + LHP
Sbjct: 87 RKFNLQNNYAIPLLHP 102
>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
Length = 340
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -2
Query: 460 DRTLTPQTPVFCTSTWNFSCTIILSSTNKAELFSSVPTAVSF*SRRSLNILLL 302
D T T V TSTW T+++ S E F +V + V F +RS+ I+LL
Sbjct: 106 DVTCKFYTFVMNTSTWVSLVTLLVIS---VERFRAVSSVVHFTEKRSVLIILL 155
>SB_27364| Best HMM Match : Hep_Hag (HMM E-Value=4.9e-05)
Length = 311
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 509 VDVLVDSGCRGDRIVKRQNFDPTNTSFLHVHLEFFLHDHP 390
VD LVD GC + N D ++T L + +E ++ D P
Sbjct: 261 VDTLVDGGCAVGKPGVEMNVDGSDTLDLVIAVETWMCDEP 300
>SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 246 DETLQEIYQVARLHPHKC 299
D+ L+ +Q+AR HPH C
Sbjct: 339 DDALRVYHQIARHHPHSC 356
>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 509 VDVLVDSGCRGDRIVKRQNFDPTNTSFLHVHLEFFLHDHP 390
VD LVD GC + N D ++T L + +E ++ D P
Sbjct: 603 VDTLVDGGCAVGKPGVEMNVDGSDTLDLVIAVETWMCDEP 642
>SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05)
Length = 253
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -2
Query: 460 DRTLTPQTPVFCTSTWNFSCTIILSSTNKAELFSSVPTAVSF*SRRSLNILLL 302
D T T V TSTW T+++ S E F +V + V F +RS+ I+LL
Sbjct: 34 DVTCKFYTFVMNTSTWVSLVTLLVIS---VERFRAVSSVVHFTEKRSVLIILL 83
>SB_58203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 502 YWLIVAAEEIVSSKDRTLTPQTPVFCTSTWNFSCTIILS 386
YWL + + + TL Q P FC W+ T L+
Sbjct: 186 YWLCIVISVLFEVLEYTLEHQLPNFCECWWDHYLTAELT 224
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 293 MRVQPCNLVDFLQSFICSTEGKCGYKSPRRQTGHDEVAVRFIIDPDR 153
+R P L F + + + +CG+K R G + VRF + P R
Sbjct: 106 LRFGPQELGSFKYNSVDVSVLRCGHKDLLRLHGEARLPVRFFVPPSR 152
>SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)
Length = 219
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 330 DQKETAVGTLEKSSALFVDERMIVQEKFQVDVQK 431
D + +GT E+ A+F ++R ++E ++D +K
Sbjct: 32 DNQSELIGTSEERKAIFKEQREQLEESSRIDKEK 65
>SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2)
Length = 120
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 112 RTSKGHCTNSPTT*RSGSIMKRTATSSCPVCRRGLLYPHFPS 237
RT+K H T +P+T SG+ K T S P + + P S
Sbjct: 37 RTAKSHTTTTPST-SSGTTSKPTRVPSNPTMAKVITKPRTTS 77
>SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 330 DQKETAVGTLEKSSALFVDERMIVQEKFQVDVQK 431
D + +GT E+ A+F ++R ++E ++D +K
Sbjct: 52 DNQSELIGTSEERKAIFKEQREQLEESSRIDKEK 85
>SB_28939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 217 LYPHFPSVLQMKLCKKSTRLQGCTLINASITKYSSFSGIRRKLPSGRWRKAQ 372
L P F +L++ C + L+ + SIT Y + +K GRWR+ Q
Sbjct: 67 LDPQF-KLLRLGGCLEGEALETVKGLGYSITAYEAVKNRLQKKYGGRWRQVQ 117
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 413 PGGRAENWCLWGQSSVF*RYDLLGSH 490
P G+ WC Q +VF RY L G H
Sbjct: 542 PTGKQRFWCRVLQLTVFCRYRLAGDH 567
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,542
Number of Sequences: 59808
Number of extensions: 362992
Number of successful extensions: 882
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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