Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    29   1.4  
At3g04330.1 68416.m00458 trypsin and protease inhibitor family p...    29   1.4  
At1g61030.1 68414.m06871 expressed protein                             28   4.4  
At1g32950.1 68414.m04058 subtilase family protein contains simil...    27   5.8  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    27   7.7  

>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +3

Query: 105 AGAYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVA 278
           A   F+  +++F+      + +++DS+  +  L       A+    T E  QE++Q+A
Sbjct: 438 ASGCFENWIFQFAQLFKNHVGFDSDSYVDLHDLGMKLYTEAMEDAVTGEDAQELFQIA 495


>At3g04330.1 68416.m00458 trypsin and protease inhibitor family
           protein / Kunitz family protein weak similarity to 21
           kDa seed protein [Theobroma cacao] GI:21909, Kunitz
           trypsin inhibitor TI3 [Populus tremuloides] GI:13605354;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 202

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 285 HPHKCFNNKIFKLLRDQKETAVGTLEKSSALFVDERMIVQEKFQVDVQKTGVCGVKVLSF 464
           HP+      +  +L ++ ET V    K    FVD R   +  F   VQ+T   G  VL+ 
Sbjct: 78  HPNMAAPTPVMFVLSNKSETVVRESAKLKIKFVDPRPCGESGFWRVVQRTSSEGEVVLNG 137

Query: 465 DDTISSAAT 491
            ++ S  A+
Sbjct: 138 SESTSDNAS 146


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 283 CTLINASITKYSSFSGIRRKLPSGRWRKAQLCSLTRG*SCKK 408
           CTL   + +   SF+G    L SG  R     S TR  SCKK
Sbjct: 475 CTLTTTAGSNTGSFAGRLASLGSGISRSKTRTSQTRESSCKK 516


>At1g32950.1 68414.m04058 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 773

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 451 LTPQTPVFCTSTWNFSCTIILSSTNK 374
           +TP+T VF + T + S T+I+S+T+K
Sbjct: 711 VTPETLVFNSKTKSVSFTVIVSTTHK 736


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 140 EFVQ*PFEVRAGGFQVTLAVDPGSKE 63
           EF    F++R GG++  +AVDP S +
Sbjct: 557 EFSPSAFQIRYGGYKGVVAVDPNSSK 582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,329
Number of Sequences: 28952
Number of extensions: 240270
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)