Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 121 NYRRTTLYVFVTPHNHYYTQNNKVNESFDKL 29
           NY+ +    +   +N+Y   NN  N ++ KL
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKL 351


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 82  HNHYYTQNNKVNESFDKLKSFLVPN 8
           +N+Y   NN  N ++ KL+ + + N
Sbjct: 95  NNNYNNYNNNYNTNYKKLQYYNIIN 119


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 261 ELYPQIHSRWSYKGCVIGKIQ 323
           +LY Q    W Y   VI ++Q
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQ 482


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 23/97 (23%), Positives = 38/97 (39%)
 Frame = +1

Query: 160 AAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGHTKAVSSVKFSPNGEW 339
           AA  T   PS    G +S S S+P S  SSV+  +   +     +T       F    ++
Sbjct: 73  AAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSE----NYTGISDLFVFDDLNDY 128

Query: 340 LASSSADKLIKIWGAYDGKFEKTISGHKMGISDVAWS 450
           +   +    + +   YDG     ++G     S +A S
Sbjct: 129 INRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASS 165


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 169 QTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGH 294
           Q H  PS + S P     SA  S  +      Y      A H
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAH 98


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 263  FGFATEDLFD 234
            FGF+TED+ D
Sbjct: 1416 FGFSTEDILD 1425


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 337 WLASSSADKLIKIWGAY 387
           W+   +   L+K+WG Y
Sbjct: 181 WVTPFTVLPLLKVWGRY 197


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 181 GPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGHTKAVSSVKFS 324
           G +  LS  +S S + P++   +    +YT    L  H +   +V  S
Sbjct: 95  GDATGLSNRSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNVS 142


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 337 WLASSSADKLIKIWGAY 387
           W+   +   L+K+WG Y
Sbjct: 181 WVTPFTVLPLLKVWGRY 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,030
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)