Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E04f
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.12 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.12 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.27 
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   1.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 108 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 194
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 108 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 194
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 203 PSTGQTVPQQHHQIPIAQTCAPL 135
           PS G T P+   +IP+A   APL
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPL 95


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 390 LILMGLFSGISLIETISPVVFLNF 461
           LIL  L   + ++ET++P+ F++F
Sbjct: 40  LILKVLVDQVMILETMTPLDFMDF 63


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 390 LILMGLFSGISLIETISPVVFLNF 461
           LIL  L   + ++ET++P+ F++F
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDF 123


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 390 LILMGLFSGISLIETISPVVFLNF 461
           LIL  L   + ++ET++P+ F++F
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDF 123


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 192 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCN 82
           S+  ++   D + PN      DL PS   G +  SC+
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCD 172



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  NYKK*VLGLLYAKVLSLL*WCTRLGNGN 164
           N +K   G ++AK+LS+L     LGN N
Sbjct: 494 NRRKPKPGTIFAKLLSVLTELRTLGNQN 521


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 322 HGIHGTCCVHLNETHSVARYQN 387
           HG+H   C      +S+  +QN
Sbjct: 215 HGVHNELCNLCQVANSIYGFQN 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,482
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)