Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314E04f
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 111 7e-26
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 111 7e-26
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 1.1
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 26 3.3
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 4.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 4.4
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 5.8
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 7.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.7
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 7.7
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 111 bits (266), Expect = 7e-26
Identities = 64/130 (49%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Frame = -1
Query: 466 LKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCY 287
+ K KK TGEIV K FGIW+RY+SRSG HNMY+E+RD + GAV Y
Sbjct: 47 INKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMY 106
Query: 286 RDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNT 119
DM ARHRAR SI+I+K VEV K RR VKQ N ++FPLP R V
Sbjct: 107 ADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKV 166
Query: 118 FAYKRPSTYF 89
FA RPST++
Sbjct: 167 FAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 111 bits (266), Expect = 7e-26
Identities = 64/130 (49%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Frame = -1
Query: 466 LKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCY 287
+ K KK TGEIV K FGIW+RY+SRSG HNMY+E+RD + GAV Y
Sbjct: 47 INKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMY 106
Query: 286 RDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNT 119
DM ARHRAR SI+I+K VEV K RR VKQ N ++FPLP R V
Sbjct: 107 ADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKV 166
Query: 118 FAYKRPSTYF 89
FA RPST++
Sbjct: 167 FAPHRPSTFY 176
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 338 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 159
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 158 IAQTCAPLQET 126
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 54 PM*KWNKVSFYIPQKKK 4
P+ KW++ SFY+P+ +K
Sbjct: 351 PLNKWDRSSFYLPKTEK 367
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 158 WESDGAVVELFDLWTATRSSLDY 226
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 299 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQH 171
HS R G+ T + + + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 16 WDIKRNFIPFLHGFYCYVTY 75
+D+ RN PF HG +C V Y
Sbjct: 94 YDLVRN--PFTHGLFCVVFY 111
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 193 VKQFHNSTIRFPLPKRVHHYKRLN 122
+++F FP K+VHHY+ N
Sbjct: 414 LRKFEIQNANFPSVKKVHHYQYPN 437
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 122 IKSLVVVHTFGQWES---DGAVVELFD--LWTATRSSLD 223
I SLV +H +G W++ A+V F+ W A S D
Sbjct: 281 INSLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSMFD 319
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 42 IFTWVLLLCDVHYNYKK*VLGLLYAKVLSLL*W 140
+FT L D +YN V+GLL + +L + W
Sbjct: 30 LFTGKLNFADFYYNTNPFVVGLLLSFILGNVLW 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,724
Number of Sequences: 5004
Number of extensions: 38552
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -