Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E04f
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   9e-33
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    31   0.36 
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   4.5  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 28   4.5  
SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)                  27   7.8  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  136 bits (329), Expect = 9e-33
 Identities = 65/97 (67%), Positives = 72/97 (74%)
 Frame = -1

Query: 469 QLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQC 290
           QLK+ KK+ GEIV             KNFGIWLRY+SRSG HNMYREYRDL+V GAVT C
Sbjct: 250 QLKRMKKSQGEIVSCQQIYEKKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTAC 309

Query: 289 YRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFH 179
           YRDM ARHRAR +SIQI+KVEVI A+  RRP VKQ H
Sbjct: 310 YRDMAARHRARGYSIQIMKVEVIPASKARRPHVKQMH 346


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 147 VCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KWNK 34
           +C T    I SRTRGL  ++CN  V  + + P  KW K
Sbjct: 820 LCDTCAFNITSRTRGLCPSTCNKTV-SVRVDPSGKWQK 856


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 299 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 159
           H + Q+     QSPS+ N    +             Q  PQQHHQ+P
Sbjct: 302 HHLPQQQPQQLQSPSNHNAQPMTTQAAAFFQQVPEQQQSPQQHHQLP 348


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 250 SIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNT 119
           S++I    ++   AC  P V   HN  +R  + + VHH KR+ T
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRT 288


>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
          Length = 130

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 159 HCPNVCTTTRDLIPSRTRGLALTSCNCNV 73
           H  +VC T R +    TR   L  C C +
Sbjct: 31  HAQSVCCTVRAVFTHHTRSACLLHCPCRI 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,499
Number of Sequences: 59808
Number of extensions: 311810
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)