Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E04f
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   144   4e-35
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   0.73 
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   0.73 
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    24   7.7  
Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    27   9.0  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  144 bits (348), Expect = 4e-35
 Identities = 66/126 (52%), Positives = 86/126 (68%)
 Frame = -1

Query: 466 LKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCY 287
           L++ KK  GEI+             KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCY
Sbjct: 54  LRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCY 113

Query: 286 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 107
           RDMGARHRA+A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F   
Sbjct: 114 RDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTA 173

Query: 106 RPSTYF 89
           R +T+F
Sbjct: 174 RQNTHF 179


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 195 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 49
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 195 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 49
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 23.8 bits (49), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 313 HSGHGIHGTC 342
           H GHG HG+C
Sbjct: 285 HGGHGRHGSC 294



 Score = 21.4 bits (43), Expect(2) = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 307 HLHSGHGIHGT 339
           H H GHG HG+
Sbjct: 253 HGHGGHGGHGS 263


>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 204 AVHRSNSSTTAPSDSHCPNVCTTT 133
           A    N STT+PS S C    TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 266 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 138
           QS +  ++ +QS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 266 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 138
           QS +  ++ +QS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 204 AVHRSNSSTTAPSDSHCPNVCTTT 133
           A    N STT+PS S C    TTT
Sbjct: 372 AFFAQNISTTSPSSSSCARTTTTT 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,418
Number of Sequences: 27780
Number of extensions: 227824
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)