Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E04f
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         118   2e-27
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    117   5e-27
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   114   3e-26
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   1.6  
At2g42940.1 68415.m05322 DNA-binding family protein contains a A...    27   8.5  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  118 bits (284), Expect = 2e-27
 Identities = 54/105 (51%), Positives = 69/105 (65%)
 Frame = -1

Query: 469 QLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQC 290
           +LKK KK+ G+++             KNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q 
Sbjct: 49  KLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQM 108

Query: 289 YRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 155
           Y +M +RHR R   IQIIK   + A  C+R   KQFHNS I+FPL
Sbjct: 109 YTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  117 bits (281), Expect = 5e-27
 Identities = 53/103 (51%), Positives = 68/103 (66%)
 Frame = -1

Query: 463 KKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 284
           KK KK+ G+++             KNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y 
Sbjct: 51  KKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 110

Query: 283 DMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 155
           +M +RHR R   IQIIK   + A+ C+R   KQFHNS I+FPL
Sbjct: 111 EMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  114 bits (274), Expect = 3e-26
 Identities = 52/105 (49%), Positives = 68/105 (64%)
 Frame = -1

Query: 469 QLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQC 290
           +LKK KK+ G+++             KN+GIWLRY+SR+G HNMY+EYRD ++ G V Q 
Sbjct: 49  KLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQM 108

Query: 289 YRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL 155
           Y +M +RHR R   IQIIK   + A  C+R   KQFHNS I+FPL
Sbjct: 109 YTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPL 153


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 193 VKQFHNSTIRFPLPKRVHHYK 131
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At2g42940.1 68415.m05322 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 257

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 207 VAVHRSNSSTTAPS---DSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIK 55
           +  H S +S  A +    S C ++C T  D    + RGL + S N  V ++T++
Sbjct: 71  IVTHDSPNSLRANAVEISSGC-DICETLSDFARRKQRGLCILSANGCVTNVTLR 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,668
Number of Sequences: 28952
Number of extensions: 207613
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)