Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E03f
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      30   1.2  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   3.6  
SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)                28   4.7  
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 27   8.3  

>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 21  VDELTAHL--VLSGYWRAHRHLQRKCTTHLEV 110
           +++LTA    V++G+WR ++HL  K   HL V
Sbjct: 438 LNQLTAQANDVMAGFWRRNKHLTEKLCQHLVV 469


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 462 PPLEDTYARSSSN*TLVMPSVXLSFVSYXA 373
           P L D YAR S   T V   V +SF SY A
Sbjct: 219 PHLVDAYARESIQFTRVSGGVNISFTSYRA 248


>SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)
          Length = 240

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 343 WFSRPFTTYTTASYVNVLKLFKYFPS 266
           W  R F  Y  A  VN    F YFPS
Sbjct: 6   WLCRVFLVYGAALVVNADSYFSYFPS 31


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 418  ACDAVCXVKFCKLXRLGIGENVMVGWFSRPF 326
            A D VC V   KL  LG+ E+ +  WFS  F
Sbjct: 1455 AFDTVCHVLLQKLPGLGVAEDEL-RWFSNSF 1484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,725,326
Number of Sequences: 59808
Number of extensions: 220256
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)