Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    27   2.2  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   3.0  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    26   3.0  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    26   3.0  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   3.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.0  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 307 IMNQSLLKII-LSAVDLDVILQSLQSVGITV*TRTDSNSCS 188
           ++NQ LL+ + +S   +D +LQ+ +S+G T  T      C+
Sbjct: 294 VLNQKLLECLGVSHYSIDRVLQATKSIGWTKLTGAGGGGCT 334


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 NIKSNNLK*ILSNLFS*YICYPHNCRTTVRICTSS 217
           NIK++ +K  L+NLF+ +  +  +C    RI T S
Sbjct: 40  NIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRS 74


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 NIKSNNLK*ILSNLFS*YICYPHNCRTTVRICTSS 217
           NIK++ +K  L+NLF+ +  +  +C    RI T S
Sbjct: 60  NIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRS 94


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 NIKSNNLK*ILSNLFS*YICYPHNCRTTVRICTSS 217
           NIK++ +K  L+NLF+ +  +  +C    RI T S
Sbjct: 40  NIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRS 74


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 113 NIKSNNLK*ILSNLFS*YICYPHNCRTTVRICTSS 217
           NIK++ +K  L NLF+ +  +  +C    RI T S
Sbjct: 40  NIKTDKIKFFLDNLFTEFSKFHDSCYPDGRISTRS 74


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 449  FVLN-ICFTLKLSFIILLGIYYLYSVN 372
            F+L  IC++  LS ++++ +++LY  N
Sbjct: 1034 FILGVICYSAPLSLLLIVPLFFLYLYN 1060


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 452 FFVLNICFTLKLSFIILLGIYYLYSVNSW**GIMYNCILTYITNKCEMYYESIIVE 285
           FF + I F   LSF  LLG+  +  VN    G  +  I   +  K E ++ S +V+
Sbjct: 100 FFKMGIKF---LSFASLLGVLIIMPVNKHFRGDAFGNITLSMPAKSEYFFSSPLVK 152


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 409 IKDSLRVKQIFKTKNPHFDLNLISSSTANRRIY 507
           I   L VKQ   TK  +F +N+ +  T   R+Y
Sbjct: 631 ISSILNVKQFASTKCDYFYMNIQNIGTVRFRLY 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,736
Number of Sequences: 5004
Number of extensions: 36225
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)