Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)               29   2.3  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           28   4.1  

>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
          Length = 704

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 442 KTKNPHFDLNLISSSTANRRIYKFFF 519
           K KNPHFDL  ++S+ +   I+  +F
Sbjct: 369 KLKNPHFDLKFVTSTVSMNDIFWEYF 394


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 359 GIMYNCILTYITNKCEMYYESIIVENYPVCR*FRCYSTVITVCRY 225
           GI+ N ++ Y  NK   Y  S++V   P C  F  Y T   + RY
Sbjct: 846 GILRNLLIRYRANKIYTYVGSVLVAVNPYCS-FPIYGTAY-ISRY 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,811
Number of Sequences: 59808
Number of extensions: 233337
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)