Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314E01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   8.1  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   8.1  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 165 TFVTRTTAEQLLESVRVQTVIPTDCNDCRITSKST 269
           T+ T  TAE+  E+ ++    P  C+   +TS ST
Sbjct: 680 TWKTAITAEKKREAEKIIPTSPPSCHSSHVTSNST 714


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 165 TFVTRTTAEQLLESVRVQTVIPTDCNDCRITSKST 269
           T+ T  TAE+  E+ ++    P  C+   +TS ST
Sbjct: 680 TWKTAITAEKKREAEKIIPTSPPSCHSSHVTSNST 714


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 156 NRFDKIYFRLFDLILKYKYFCSNSIQLP 73
           + F K+YF +F+L++ +K     SI+ P
Sbjct: 492 HHFQKVYFDIFELLIFFKINYQKSIKSP 519


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 156 NRFDKIYFRLFDLILKYKYFCSNSIQLP 73
           + F K+YF +F+L++ +K     SI+ P
Sbjct: 381 HHFQKVYFDIFELLIFFKINYQKSIKSP 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,065
Number of Sequences: 27780
Number of extensions: 201075
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)