Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314D11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 29 0.42
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.42
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 29 0.56
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 0.73
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 28 0.97
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 1.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 1.7
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 3.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 3.0
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 3.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.9
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 5.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 5.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 6.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 6.8
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 25 6.8
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 25 6.8
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.0
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 9.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.0
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.0
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.42
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = -1
Query: 425 QHKSSGKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANL--STINKLKQFACEQ 252
Q KS ++ +E + + + + ++D ++ K A QE++ANL N+L++ EQ
Sbjct: 90 QRKSMVDDLRERERQFYDSL-EKKENERDRLQEKLRALQEESANLRRQRENRLRE---EQ 145
Query: 251 KYNIDKYEEKLS--ISEYNNSFKFNIENKSTNAVQDKSERS 135
+ + + +E S ISE + S + + K + V D RS
Sbjct: 146 EQSKRRKQETPSSKISELDRSIRIRWKRKYADQVNDAYLRS 186
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.42
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 446 LKFEGESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQ 267
LK + +SS ++++ + NK++ I V R + D ENKT A N
Sbjct: 722 LKSKKVDPGRSSMEQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYS 781
Query: 266 FACEQKYNIDKYEEKLSISEYN 201
F+ + I+K K ++N
Sbjct: 782 FSKREDVPIEKLFSKTIRDKFN 803
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.56
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -1
Query: 464 AEYGINLKFEGESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLST 285
A YG + + +G + ++S G L + NE ++P +KD + N +A ++
Sbjct: 46 ASYGYDQRGQGRNFYESDGPGANLVKKDWKNETLIP--FQKDFYKEHENVRNRSDAEVTE 103
Query: 284 INKLKQ 267
K K+
Sbjct: 104 YRKEKE 109
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 425 QHKSSGKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQ 267
+HK + +I EN +++I +++ V + N+ QE+NANL LK+
Sbjct: 674 RHKKNASQITNNENNGNDDIKKGDEPEEEHVGLRKNSTQEKNANLDPNEALKR 726
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 0.97
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = -1
Query: 422 HKSSGKRIKLKENKIDNEIIV--PRI--EKKDLVENKTNAYQEQNANLSTINKLKQFACE 255
+ SSG+R L E+KI N + R+ E++ +EN T E N ++ + E
Sbjct: 146 NNSSGQRQPLTESKISNSQLEYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGE 205
Query: 254 QKYNIDKYEEKLSISEYNNSFKFNIENKSTNAVQDKS 144
NI+ S + N S + I N+ + + +S
Sbjct: 206 LVTNIEYNVGNTSTNTKNASRQLQIANEHSRKARKRS 242
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -1
Query: 371 EIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQFACEQKYNIDKYEEKLSISE 207
E I+ +E K EN ++ E +L T+ KLK+ E + + +YE + S SE
Sbjct: 322 EKILDLLEMKQQEENDRISHIEYENDL-TVKKLKRRISELEMAVKEYESEKSYSE 375
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 443 KFEGESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVENKT-NAYQEQNANLSTINKLKQ 267
K GE Q + G R +KEN+ + EII +++ +++VE K Y+ + NK+ +
Sbjct: 52 KNHGEKQ--AMGSRKLIKENREEREII-RKVDNEEVVEKKLWTTYELGPYEYISFNKVYE 108
Query: 266 FA 261
A
Sbjct: 109 IA 110
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.0
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Frame = -1
Query: 500 LLNAVPSV-NDVFAEYGI--NLKFEGESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVE 330
LL A+P+V + +F G+ + F S + K+IKL + N+ E K+L
Sbjct: 778 LLEALPNVYSSLFIREGVVQEVGFLVRSTNADM-KKIKLSISFSQNKSAARHEELKNLST 836
Query: 329 NKTNA------YQEQNANLSTINKLKQFACEQKYNIDKYEEKLSISEYNNSFK 189
K+ A Y+E+N ST+ +LKQ + K+ + + ++ S SE F+
Sbjct: 837 LKSLAKEFLSNYKEENLENSTLVQLKQLS---KHLLSETKQDESFSELAKIFQ 886
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Frame = -1
Query: 371 EIIVPRIEKKDLVENKTNAYQEQN-------ANLSTINK--LKQFACEQKYNIDKYEEKL 219
E + P I+K +++E K + +N L++ N + + +++ + + +K
Sbjct: 122 EYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQ 181
Query: 218 SISEYNNSFKFNIENKSTNAVQDKSERSSQISIFESSDCDV 96
+ N +FK + E + ER S +S E S C++
Sbjct: 182 MLQLQNENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEI 222
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 3.9
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Frame = -1
Query: 431 ESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVEN----KTNAYQEQNANLSTINKLKQF 264
+S+ + +K + +D+E+I+ +EK + EN K + STINK
Sbjct: 118 DSEQITKINAVKKRFPALDSEMIIATLEKFNWRENITIHKLTFQKLLGRGNSTINK---- 173
Query: 263 ACEQKYNIDKYEEKLSISEYNNSFKFNIENKSTNAVQDKSERSSQISIFESSDCDV 96
QK N ++ EK S+ + N K +E + + K R ++S E+++ D+
Sbjct: 174 -SAQKLN-NQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDL 227
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -1
Query: 416 SSGKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQFACEQKYNID 237
S +++ + N++ +E+ L+ + + N I L+ +++ D
Sbjct: 983 SKSSKLEADIEHLKNKVSEVEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAEND 1042
Query: 236 KYEEKLSI--SEYNNSFKFNIENKSTNAVQDKSERSSQI 126
+ KLS+ SEY N I +++ +++DK+ + I
Sbjct: 1043 DLQSKLSVVSSEYENLLL--ISSQTNKSLEDKTNQLKYI 1079
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.2
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -1
Query: 455 GINLKFEGESQHKSSGKRI-KLKENKIDNEIIVPRIEKKDLVEN-KTNAYQEQN--ANLS 288
GI L + H+ G + K+K +D E +IEK N N Y N ++
Sbjct: 39 GIFLCLRCATIHRKLGTHVSKVKSISLD-EWSNDQIEKMKHWGNINANRYWNPNPLSHPL 97
Query: 287 TINKLKQFACEQKYNIDKYEEKLSISEYNNSFKFNIENKSTNAVQDKSERSSQISIFESS 108
N L +KY DKYE KL + E N+S N ++ +++ SSQ S S+
Sbjct: 98 PTNALSDEHVMEKYIRDKYERKLFLDE-NHS-----TNSKPPSLPPRTKSSSQSSPMAST 151
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 398 KLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQFACEQKYNID--KYEE 225
KL E+ ID+E+ + K ++N + + KLKQ A E K + D +E
Sbjct: 345 KLNEDDIDSELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQLA-EIKLSKDGKPFEN 403
Query: 224 KLSISEYNNS 195
+ +I +N +
Sbjct: 404 EFNIKSFNRN 413
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 395 LKENKIDNEIIVPRIEKKDLVENKTNAYQ-EQNANLSTINKLKQFACEQKYNIDKYEEK 222
+K+N++ I+ KK LV+N N+ + + A+L + ++ E+ + EK
Sbjct: 355 MKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNEEVKSLREK 413
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 335 VENKTNAYQEQNANLSTINKLKQFACEQKYNIDKYEEKLSISE 207
VEN+ +LST+ + F QK + +K +E L+I +
Sbjct: 1913 VENQQYVVSGNLLSLSTLGHVLNFLKVQKIDFEKLKETLTIEQ 1955
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -1
Query: 296 NLSTINKLKQFACEQKYNIDKYEEKLSISEYNNSFKFNIENKSTNAVQDKSERS 135
NL + K A ++ + +E++ + K N+E+KST+ D +S
Sbjct: 115 NLKDLELPKDEASSEEQSFSSSKEEVKPIVQDRETKSNVEHKSTSQANDAVNKS 168
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 224 FLHIYQCYIFVHMRTVSIYLLLRDL 298
F+ + Q Y VH+R VSIY+ L+ L
Sbjct: 46 FISVLQMYK-VHIRMVSIYIFLKAL 69
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 341 DLVENKTNAYQEQNANLSTINKLKQFACEQKYNIDKYEEKLSISEYNNSFKFNIENKST 165
DL N NA ++ + A NI++ E+L NS +FN EN+ T
Sbjct: 225 DLEGNDQNANVIAELRPDITMRIDKEALPFMKNINQLSERLLEKSLGNSKRFNNENEET 283
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 281 NKLKQFACEQKYNIDKYEEKLSISEYNNSFKFNIENKSTNAV 156
NKL Q K + D+Y+ K+ I++Y ++ + N +TN V
Sbjct: 898 NKLTQPISIIKTDGDEYKAKMEINDYPQQARWAVTN-NTNIV 938
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 491 AVPSVNDVFAEYGINLKFEGESQHKSSGKRIKLKENKIDNEIIVPRIEKKDLVE 330
A+P V + ++Y + K KR L NKI +E +V + + LVE
Sbjct: 309 ALPLVGEYLSDYISHRKLYSSETQSQRLKREVLDANKIYSESVVDLDKCRTLVE 362
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 440 FEGESQHKSS-GKRIKLKENKIDNEIIVPRIEKKDLVENKTNAYQEQNANLSTINKLKQF 264
F+ + KS + LKE K NE+ R K++V T A + A +NK +
Sbjct: 9 FKAKKPFKSKHASKSSLKE-KYKNEVEPHRSGPKNIVHTSTKADRRNTAKQIQLNKRTEV 67
Query: 263 ACEQK 249
A +
Sbjct: 68 AMNNR 72
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 461 EYGINLKFEGESQHKSSGKRIKLKENKIDNEII 363
++G N+K + + S + +LK N+ DN+ I
Sbjct: 274 DFGFNVKVYEKLEKLESSLQFELKRNERDNDFI 306
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 227 LHIYQCYIFVHMRTVS 274
LHIY+ ++F+H R ++
Sbjct: 659 LHIYRAFVFLHNRDIA 674
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,495
Number of Sequences: 5004
Number of extensions: 25310
Number of successful extensions: 134
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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