Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)        106   1e-23
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)         71   8e-13
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               65   4e-11
SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_3153| Best HMM Match : PAN (HMM E-Value=0.0028)                     27   7.1  

>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/68 (69%), Positives = 55/68 (80%)
 Frame = +1

Query: 295 FI*TELGHGTFVRGLETTATYDPKTKEFVLHSPSLTAYKWWLGGLAHTANYCIVMAQLYT 474
           F  TELGHGTFVRGLETTATYD +T++FVLHSPSLTA KWW G L H+ NYCIV+A+L  
Sbjct: 171 FAQTELGHGTFVRGLETTATYDKQTQQFVLHSPSLTASKWWPGNLGHSTNYCIVVARLII 230

Query: 475 AGKCHGIH 498
             K +G+H
Sbjct: 231 DDKEYGLH 238


>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
          Length = 647

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +1

Query: 304 TELGHGTFVRGLETTATYDPKTKEFVLHSPSLTAYKWWLGGLAHTANYCIVMAQLYTAGK 483
           TELG+G     +ETTATYD +T+EF++++PS  A K+W+   A  A++ +V AQLY  GK
Sbjct: 176 TELGYGNNAVQMETTATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIVVFAQLYVNGK 235

Query: 484 CHGIHAL 504
             GIH +
Sbjct: 236 NEGIHGV 242


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 31/67 (46%), Positives = 43/67 (64%)
 Frame = +1

Query: 304 TELGHGTFVRGLETTATYDPKTKEFVLHSPSLTAYKWWLGGLAHTANYCIVMAQLYTAGK 483
           TELG+G     +ETTA YD +TKEFV+++PS  A K+W+   A  A++ +V AQ Y  G 
Sbjct: 197 TELGYGNNAVQMETTAVYDKETKEFVVNTPSPLAQKYWITNGACHAHHIVVFAQTYVDGV 256

Query: 484 CHGIHAL 504
             GIH +
Sbjct: 257 NQGIHGV 263


>SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 418 LGGLAHTANYCIVMAQLYTAGKCHGI 495
           +G + HT ++ IV+AQLY   K +GI
Sbjct: 165 MGHVGHTCSHAIVLAQLYIGKKSYGI 190


>SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 510 TMKGVDAVAFPGGVQLSHHDTIVGRVSQS 424
           T+  + AVA  GG  +SHHDT V R   S
Sbjct: 394 TLYMICAVATQGGTVVSHHDTRVTRYKLS 422


>SB_3153| Best HMM Match : PAN (HMM E-Value=0.0028)
          Length = 285

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -2

Query: 100 IIIHTQ--THMRTHARTDA 50
           +I HTQ  TH RTHART A
Sbjct: 258 VITHTQARTHARTHARTHA 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,885
Number of Sequences: 59808
Number of extensions: 263581
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)