Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   3.9  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   6.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.8  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   9.0  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -1

Query: 446 CLQLVNLKRYFALLL*IKDHCKSFLDIKGHHFMIYEINR*IFLR--KYLLLFRYILN*HK 273
           C++L +L  Y  L+L I  H    +     HF +  +   I  +  K+ +++  +L+   
Sbjct: 359 CIKLTSLDTYSLLVLEIMKHPSLLISAISQHFWVLALRDPIISKHEKFQIVYPELLSIAS 418

Query: 272 AKLLSKLNTIISFSVPE 222
            +LL   + ++   +PE
Sbjct: 419 ERLLRFEDAVVEL-IPE 434


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 164 CDFQSPERSSHCLNC 120
           C F+ P RS HC  C
Sbjct: 163 CKFEKPARSKHCRLC 177


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 LFSITATHLSKWNALLLRDIIGWG 52
           +  +TA HL  W+ ++ R +IGWG
Sbjct: 172 IVQVTAHHL--WHMIVGRFVIGWG 193


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 141  IKSLPQLFSITATHLSKWNALLLRD 67
            I + PQLF+I  TH +K N L ++D
Sbjct: 1029 INTFPQLFNILTTHATKDN-LTVKD 1052


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 38  AKKLFPQPIMSRSSNAFHFERWVAVI 115
           A+ L   PI+++S + FH+  W+ +I
Sbjct: 276 ARALSQGPIVTKSWHYFHYSEWLHMI 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,342
Number of Sequences: 5004
Number of extensions: 38839
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)