Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                    29   2.3  
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_58032| Best HMM Match : Rho_N (HMM E-Value=0.0007)                  27   7.1  

>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 728

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -1

Query: 491 AVKFTCIRLLFTEVFCLQLVNLKRYFALLL*IK 393
           A++FT   L   ++F + L++L++YF+LL  +K
Sbjct: 113 ALRFTTCTLSSIKIFSILLISLEKYFSLLYPLK 145


>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 204 EKSHAFLIKTHPVM*FSEPREIKSLPQLFSITATHLSKW 88
           EKS + L K +    +  PRE   L ++  +T T +S W
Sbjct: 188 EKSRSILNKAYVDSPYPTPREKHELAKMTDLTVTQVSNW 226


>SB_58032| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 243

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 338 FHKS*NDDLLCLENFCNDLLFTKVTQNIFLNLLIVDKTLQ 457
           F K+ +D  +CL N  NDL + K  + ++ + L  D T +
Sbjct: 56  FLKTDDDYFVCLNNLANDLQYRKNEKYLYWDWLGCDPTFE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,521
Number of Sequences: 59808
Number of extensions: 257724
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)