Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   6.2  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set (trithorax/...    27   8.1  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    27   8.1  

>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 250 TQLSHLVCLKSNLTQ*KEPCISYKDTPSYVIFRAQRDQVIASIV 119
           T L H+VCL  +    ++  + Y++        A+RD ++AS++
Sbjct: 279 TPLKHIVCLVRSEKDPQQFIVEYENGDGRAYVAAERDLILASLL 322


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 250 TQLSHLVCLKSNLTQ*KEPCISYKDTPSYVIFRAQRDQVIASIV 119
           T L H+VCL  +    ++  + Y++        A+RD ++AS++
Sbjct: 279 TPLKHIVCLVRSEKDPQQFIVEYENGDGRAYVAAERDLILASLL 322


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 167 LCDFQSPERSSHCLNCLV*RLPTFQSGTHYC 75
           +CD +  E    C+  LV  +PTF S T YC
Sbjct: 72  ICDDRW-ELQHQCIKFLVEAMPTFGSATEYC 101


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 250 TQLSHLVCLKSNLTQ*KEPCISYKDTPSYVIFRAQRDQVIASIV 119
           T L H+VCL  +    ++  + Y++        A+RD ++AS++
Sbjct: 279 TPLKHIVCLVRSEKDPQQFIVEYENGDGRAYVAAERDLILASLL 322


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 467 LLFTEVFCLQLVNLKRYFALLL*IKDHCKSFLDIKGHHFMIYEINR*IFLRKYLLLFRYI 288
           LLF  +F +    +  +  LLL IK  C   L+ +      Y++   + L  + ++F Y+
Sbjct: 210 LLFNTLFWMTCCIITNFILLLLLIKSRC--LLNAQTRSMHSYKVEVSLSLTTFSMIFSYL 267

Query: 287 LN 282
            N
Sbjct: 268 SN 269


>U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform a protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 397 IYKSNAKYLFKFTNCRQNTSVNNKRMHVNFTAKI 498
           +YK N+  +FK T+  ++T   + RM +   A+I
Sbjct: 26  LYKPNSNLVFKHTSTNKSTMEGSYRMQLRVNAEI 59


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 397 IYKSNAKYLFKFTNCRQNTSVNNKRMHVNFTAKI 498
           +YK N+  +FK T+  ++T   + RM +   A+I
Sbjct: 227 LYKPNSNLVFKHTSTNKSTMEGSYRMQLRVNAEI 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,930
Number of Sequences: 27780
Number of extensions: 210108
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)