Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D06f
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   0.98 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   4.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   5.2  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.1  

>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
 Frame = +1

Query: 223 VDGASVPGEIDQNLLLQFSCMNTTDRE----ELIK-QMQKLLGPSLNYNTASFFLDMSNW 387
           VD  S+   + + + + F+C+ T +RE    E ++  MQ+    S+ Y+T    L++S++
Sbjct: 242 VDEPSLFDYLAEKISIGFTCL-TCNREFKSLEAVRAHMQQKGHTSIAYDTEDEQLELSDF 300

Query: 388 YEFASCY 408
           Y+F + Y
Sbjct: 301 YDFTTSY 307


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 295 DREELIKQMQKLLGPSLNYNTASFFLDMSNWY 390
           D + L K    L+ P +NY+T   FLD   ++
Sbjct: 240 DNKNLPKNSASLILPPINYDTFHSFLDSLKYF 271


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 170 LFISYLFIYIKRRELKWTLMAPQYLEKLIKIYYYNLV 280
           +F+S+LF+Y  R     +LM  Q+       YYY LV
Sbjct: 394 IFVSFLFVYYMRYCTYKSLMRTQFAPH----YYYALV 426


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 247 EIDQNLLLQFSCMNTTDREELIKQMQKLLGPSLNYNTASFFLDM 378
           E +QN LLQ +   T       KQ++  +  +L+Y+   FFL +
Sbjct: 160 EEEQNSLLQSNTTYTNSDLPASKQLESFISMNLSYSKV-FFLHL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,233
Number of Sequences: 5004
Number of extensions: 28564
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)