Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D06f
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    42   3e-04
Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    28   3.5  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 250 IDQNLLLQFSCMNTTDREELIKQMQKLLGPSL-NYNTASFFLDMSNW 387
           ++ +L+ + S M T DRE LI + ++++ P +  ++ A+F+LD++NW
Sbjct: 4   LENSLISKMSQMTTDDRENLIHKFEEIISPQMIPHDLAAFYLDLANW 50


>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 191 IYIKRRELKWTLMAPQYLEKLIKIYYYNLVV*IPQTEKNLLNKC 322
           +YI +REL   L   +  EK        LV   PQ  KN++N C
Sbjct: 425 VYIFKRELPIKLQQRENAEKSPPFDMLRLVTWFPQIMKNIVNDC 468


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 244 GEIDQNLLLQFSCMNTTDREELIKQM 321
           G + +NLL     +NT D  EL+KQM
Sbjct: 139 GRLGENLLHVCMLLNTADMNELVKQM 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,117
Number of Sequences: 27780
Number of extensions: 150454
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)