Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D06f
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ...    33   0.087
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ...    33   0.087
At5g61340.1 68418.m07697 expressed protein                             27   5.7  

>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 383

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
 Frame = -2

Query: 225 NVHFSSRR--FIYMNK*EINN*LFVIINLQ-LSGIMTYPLFTYVRQLTFVL*NNKII 64
           N++ ++R+  +IY N+ E  + L+V+++L   SG+M  PL  + R+LTF L  +K I
Sbjct: 226 NIYDANRKPDYIYENEAEFRS-LYVLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEI 281


>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 406

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
 Frame = -2

Query: 225 NVHFSSRR--FIYMNK*EINN*LFVIINLQ-LSGIMTYPLFTYVRQLTFVL*NNKII 64
           N++ ++R+  +IY N+ E  + L+V+++L   SG+M  PL  + R+LTF L  +K I
Sbjct: 226 NIYDANRKPDYIYENEAEFRS-LYVLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEI 281


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 162 FVIINLQLSGIMTYPLFTYVRQLTFVL*NNKIIISNLKFI*IVNSHSQES 13
           F I++L+LS  ++  LFT    LTF+L +   +I  L      N+HS +S
Sbjct: 74  FNILSLKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLS-----NNHSADS 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,143
Number of Sequences: 28952
Number of extensions: 125034
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)