Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D05f
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.13 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   0.71 
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   0.94 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   2.9  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   3.8  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   8.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.8  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +1

Query: 181  IKSLGDQRFSRDAVCWRNDIENSTFVYMYSKYFLSTAKDLHSSIPQPLKS*RGKALKDQP 360
            +  L D +++ D   +  +I+N   +Y+ +K+F+ T  +    I  P+K   G  + +  
Sbjct: 2898 LSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIAVPVKQISGLRVSEHD 2957

Query: 361  YN 366
             N
Sbjct: 2958 LN 2959


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 226  WRNDIENSTFVYMYSKYFLSTAKDLHSS 309
            WRND  NS FVY  S  F S    L SS
Sbjct: 1337 WRNDQPNSKFVYQASGLFPSPIPLLGSS 1364


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -3

Query: 386 PHASVRMLYGWSFKAFPRYDFNGCGID 306
           P  S   LYGWSFK     DF G GID
Sbjct: 881 PIYSPEGLYGWSFKGIYLIDF-GRGID 906


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 239 MSLRQQTASRLKRWSPKDLIGFNVMGHKQSSVLNARTLRNSH 114
           M L++Q  S  +  +    +GF V+ H   +++NAR     H
Sbjct: 78  MHLQKQNLSERRMLNASCFLGFCVLAHDYVNLINARHFMIEH 119


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 362 YGWSFKAFPRYDFNGCGIDEWRSFAVLKK 276
           YG++  +FP Y F   G   W  FA+L K
Sbjct: 225 YGFNLVSFPNYFFESLG---WLFFALLTK 250


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 359 GWSFKAFPRYDFNGCGIDEWRSFA 288
           G  +K +P YDF  C +D + + +
Sbjct: 438 GDKWKIYPTYDFTHCLVDSFENIS 461


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 163 PITLKPIKSLGDQRFSR 213
           P TLKPIKS  D++  R
Sbjct: 42  PFTLKPIKSTSDRKRRR 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,729
Number of Sequences: 5004
Number of extensions: 32577
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)