Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D05f
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1501 - 27005542-27005976,27006657-27008660                       32   0.23 
03_02_0384 - 7972067-7972162,7972776-7972985,7973083-7973286,797...    29   2.2  
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663     27   8.7  

>07_03_1501 - 27005542-27005976,27006657-27008660
          Length = 812

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 30  LLRNNAKFERLLITMHQPSLYVRYSVCLVRVSQRSRIKH 146
           +LR  A  ERL++T+H P L +  S  L+ + + SR  H
Sbjct: 617 ILREAAVVERLVMTLHHPGLQITSSRILLNLCRYSRSDH 655


>03_02_0384 -
           7972067-7972162,7972776-7972985,7973083-7973286,
           7973381-7973497,7973692-7973810,7974001-7974341,
           7974492-7974646,7974948-7975109,7975262-7975321
          Length = 487

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 329 DFNGCGIDEWRSFAVLKKYLLYM*TKVEFSMSLRQQTASRLKRWSPK 189
           D +    D W +F+ + +Y      + E  MS R+ TA+   RW  K
Sbjct: 117 DVHAVPADSWYNFSKISQYKQLTLEEAEEKMSRRRSTATGYGRWMMK 163


>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
          Length = 741

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 271 CYTCRRKLNFRCHCANKQRR 212
           CYTCRR  +    C NK ++
Sbjct: 281 CYTCRRSGHISFRCPNKSKQ 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,496,276
Number of Sequences: 37544
Number of extensions: 189869
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)