Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D05f
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.8  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_28424| Best HMM Match : SAM_1 (HMM E-Value=8e-06)                   27   5.0  
SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     27   6.7  

>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 182  LNLWVTNVSVATLFVGAMTSKIQLSSTCI 268
            +N+W+ +V+    FV + T +  LSS C+
Sbjct: 1342 INIWLLHVNRGKAFVNSQTKETLLSSVCL 1370


>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 106 CA*CEF--LNVLALSTLDCLCPITLKPIKSLGDQRF 207
           C   EF  L  +A   L  LCP+T+ P K + DQ F
Sbjct: 331 CVTSEFYPLKDVAARILPALCPLTVDPEKKVRDQTF 366


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 SPLVYTTAIEVIAWKSLKRPAI*HPNRCMW 386
           S L+Y +A+    +KS KR A   PN C W
Sbjct: 721 SVLLYMSALSHCRFKSHKRCAAKAPNNCKW 750


>SB_28424| Best HMM Match : SAM_1 (HMM E-Value=8e-06)
          Length = 214

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 245 FSMSLRQQT--ASRLKRWSPKDLIGFNVMGHKQSSVLNARTL 126
           FS S R +T  +++L      DLIG  + GHKQ      +TL
Sbjct: 37  FSQSRRCKTTASAKLACLQDLDLIGIEIRGHKQKLARRIKTL 78


>SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 145 TLDCLCPITLKPIKSLGDQRFSRDAVCWRNDIENSTFVYMYSKYFLSTAKDLHSSIP 315
           TL CL    +K    L + R  RD + W N          Y +Y +ST+   H   P
Sbjct: 43  TLKCLHEFGIKTEFGLSNLRVDRDGLIWTNASSQG----KYPRYIVSTSWPYHGVQP 95


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 136  ALSTLDCLCPITLKPIKSLG----DQRFSRDAV-CWRNDIENSTFVYMYSKYFL 282
            AL  L   C   L+P + +     D+R +R+ V CW+ND E ST +     Y L
Sbjct: 2231 ALQQLLDECESELQPAREVSVAHRDKRGNRNQVSCWKNDHEASTIMTKRGTYNL 2284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,696
Number of Sequences: 59808
Number of extensions: 229991
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)