Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D05f
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   6.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 VLALSTLDCLCPITLKPIKSLGDQRFSR 213
           ++A  TL   CP+   PI+S+  +R +R
Sbjct: 502 IVAGETLRVTCPVAGYPIESIVWERDTR 529


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 356 SHITS*QMHVDISI 397
           SHI S Q+H+ +S+
Sbjct: 135 SHIISKQLHIPVSV 148


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 369 PNRCMWIYQSNFLIILTR 422
           PN  +W+Y    L+ +++
Sbjct: 108 PNHYLWLYHDKTLLYMSK 125



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 260 TCIANTF*AQRKISTRLYHSH 322
           TCI   F  +R++   L+H++
Sbjct: 201 TCIQIVFNLRRRLGYHLFHTY 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,050
Number of Sequences: 438
Number of extensions: 2105
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)