Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D05f
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11760.1 68416.m01443 expressed protein                             27   4.1  
At3g46350.1 68416.m05020 leucine-rich repeat protein kinase, put...    27   5.5  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    27   7.2  
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    27   7.2  

>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 172 LKPIKSLGDQRFSRDAVCWRNDIENSTFVYMY-SKYF 279
           L PIKS  D      ++ WRN  EN T++  +  K+F
Sbjct: 470 LMPIKSQFDSLIREGSLEWRNLCENETYMQKFPDKHF 506


>At3g46350.1 68416.m05020 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 871

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 262 MYSKYFLSTAK-DLHSSIPQPLKS*RGKALK 351
           M S  F++  K DLH SIPQ L+    K LK
Sbjct: 436 MKSLMFINLTKNDLHGSIPQALRDREKKGLK 466


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 199 QRFSRDAVCWRNDIENSTFVYMYSKYFLST 288
           Q   RDA+CW + +E     Y Y+ + L +
Sbjct: 618 QTIPRDAICWLSKLEVLNLYYSYAGWELQS 647


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 289 LCLKSICYTC--RRKLNFRCHCAN 224
           L L +ICY C  R++LNF C   N
Sbjct: 134 LKLNTICYCCCRRKELNFYCSICN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,712
Number of Sequences: 28952
Number of extensions: 163585
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)