Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   3.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   3.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.0  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    25   9.0  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 191 FSDNDKTFNTFHKHLNSSSK 132
           F DN   F TF K+LNS +K
Sbjct: 6   FDDNKAGFETFQKNLNSVAK 25


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 83  IYMFIYTSTVY*YSSRALNLNLNVCETY 166
           I +F+ +ST+Y  S+      LN+CE Y
Sbjct: 869 IKLFVESSTIYASSTGGYENILNICEKY 896


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 326 IYRAQKNVDIRILNYYKTTII 264
           I + QKN D+RI NY+   +I
Sbjct: 581 ISKLQKNFDVRIWNYWLVALI 601


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 203  YISNFSDNDKTFNTFHKHLNSSSKLWS 123
            Y+  +   DK  N+F K+LNS  +++S
Sbjct: 1206 YLCEYDSIDKVRNSFFKNLNSFYEMYS 1232


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 467 FNPQVSVNSFRIVLVLQTIW 408
           FNP  S N    V+ LQT W
Sbjct: 282 FNPHSSPNGMSNVIALQTTW 301


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 406 TQIVCSTRTMRKELTET 456
           T I+CSTRT RK++  T
Sbjct: 70  TNIMCSTRTRRKKIDFT 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,017
Number of Sequences: 5004
Number of extensions: 36719
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)