Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0467 - 9602816-9602881,9603016-9603097,9603184-9603291,960...    28   5.2  
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    27   6.9  

>09_02_0467 -
           9602816-9602881,9603016-9603097,9603184-9603291,
           9603803-9603900,9603986-9604084,9604202-9604339,
           9604748-9604799,9604876-9604989,9605054-9605142,
           9605674-9605707,9605900-9606019,9606138-9606220
          Length = 360

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 VTIETNSPRKFRRQSKVTTM 388
           V++ +NSPR+FRR  +V  M
Sbjct: 17  VSVSSNSPRRFRRSRRVVAM 36


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 293 SECLRSFVRDK*VTIETNSPRKFRRQSKVTTMRKCTK 403
           ++CLR  ++ +     T  P  +RR++K+ T+R C++
Sbjct: 166 NKCLRPTLQRRKTRTSTLRPHLWRRRTKLGTLRPCSQ 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,451
Number of Sequences: 37544
Number of extensions: 189119
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)