Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical ...    31   0.38 
Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical p...    28   4.7  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical
           protein B0454.5 protein.
          Length = 198

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 484 PCGFVILILKFLSTLFA*FLCYKRFGWFSAFSHCSY 377
           PCG++ ++L  L  ++  F CY  FG ++A ++C +
Sbjct: 132 PCGYIHVLLNILIFVWCIFGCYWVFGSWTARAYCDW 167


>Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical
           protein T06E6.3 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 502 LSYWVRPCGFVILILKFLSTLFA*FLCYKRF 410
           L+YW   CG++++I    ST F   +   RF
Sbjct: 44  LAYWSHLCGYILMICYKASTYFHFIISLNRF 74


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 374 LTASEICEVSSFLL*LIYRAQKNVDIRILNYYKTTIIF*VRTL*THTQNPI 222
           LT+S   ++ + LL LIY A   VDI ++ Y+ + I F  R   +   N I
Sbjct: 401 LTSSHSWDLEA-LLNLIYEANDFVDISVMQYFPSWIYFKNREFFSQIDNAI 450


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 408 GGLVHFLIVVTFDCLRNLRGEFVSIVTYLSRTKERRHSDPKLL 280
           G +V +L +  F  LRN +      +T+    +ERRHS P+++
Sbjct: 190 GAIVVYLYMKIFKKLRNHQLYMFGQLTHRGGERERRHSLPRVI 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,885
Number of Sequences: 27780
Number of extensions: 203110
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)