Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314D03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 30 1.3
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 30 1.3
09_03_0081 + 12163213-12164088 29 3.0
07_01_0679 - 5114271-5114402,5115015-5115086,5115168-5115236,511... 29 3.0
02_02_0378 + 9561775-9562947 29 3.0
12_01_0079 + 644754-645932,645966-646061,646193-647122 27 6.9
11_01_0076 - 600256-600897 27 6.9
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 27 6.9
12_02_1011 + 25276077-25276143,25276575-25276721,25276855-252769... 27 9.1
10_08_0187 + 15592130-15592512,15592597-15592972 27 9.1
09_02_0459 + 9566824-9567303 27 9.1
07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838... 27 9.1
05_06_0288 + 26954222-26954446,26954995-26955124,26955221-269554... 27 9.1
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 27 9.1
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 517 THTHAHTHVYPRTRMHIHARTHTYEN 440
+H+H+H+H + + H H+ H +E+
Sbjct: 497 SHSHSHSHSHSHSHSHSHSHVHGHED 522
Score = 27.9 bits (59), Expect = 5.2
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = -2
Query: 520 YTHTHAHTHVYPRTRMHIHARTHTYEN 440
++H+H+H+H + + +H H H +++
Sbjct: 502 HSHSHSHSHSHSHSHVHGHEDHHNHDH 528
Score = 27.1 bits (57), Expect = 9.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -2
Query: 520 YTHTHAHTHVYPRTRMHIHARTH 452
++H+H+H+H + + H H H
Sbjct: 498 HSHSHSHSHSHSHSHSHSHVHGH 520
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 209 RPRSGQGGDDDDVLVRAVPTGAALVGRG 126
R + G GGDDDD V A P + + +G
Sbjct: 54 RAKDGTGGDDDDAAVAAAPRKGSSIYKG 81
>09_03_0081 + 12163213-12164088
Length = 291
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 68 AGTSTPACLTNNPLAPFSFPH 130
A S P C +P +PFSFPH
Sbjct: 23 ASGSPPVCSQFSPTSPFSFPH 43
>07_01_0679 -
5114271-5114402,5115015-5115086,5115168-5115236,
5115356-5115421,5115619-5115822,5116715-5116942
Length = 256
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = -1
Query: 242 SNGGRHAVGGDRPRSGQGGDDDDVLVRAVPTGAALVGRG 126
S GG + G RPRS G +DDD L + V T AA G G
Sbjct: 34 SRGGGGS-GRRRPRSDAGPEDDD-LSKVVSTSAASGGGG 70
>02_02_0378 + 9561775-9562947
Length = 390
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 75 RLLPRASPIIPWLHLVFPTADQGSACRDG 161
R LPR +PWL +PT D +A G
Sbjct: 40 RYLPRRPSFLPWLLAPWPTPDDDTAAAGG 68
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 251 NLQSNGGRHAVGGDRPRSGQGGDDDDVLVRAVP 153
N ++G H GG R G G DD+D+ ++ P
Sbjct: 653 NQFNHGASHLNGGTRSSVGSGLDDNDLWLQKAP 685
>11_01_0076 - 600256-600897
Length = 213
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 251 NLQSNGGRHAVGGDRPRSGQGGDDDDVLVRAVPTGAALVGRGEN*MEPGDYW 96
+L GG GGD R G DDDD G A G G PG W
Sbjct: 105 DLPHGGGSAPAGGDSGRPGTDDDDDD---GGDGFGGAARGDGLAPGNPGKRW 153
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 223 LWEVTDLEVDKVVTTMMSLYVPSRQALPWSAVGKTKWSQGI 101
LWE+T L + + T++ S PS++ S+ G + G+
Sbjct: 1412 LWELTWLHANNISTSLQSDVFPSQEYEQHSSAGSPRGPNGV 1452
>12_02_1011 +
25276077-25276143,25276575-25276721,25276855-25276986,
25277130-25277269,25277481-25277567,25277776-25277904,
25278493-25278645,25278891-25278992,25279507-25279677,
25279773-25279852,25280491-25280524
Length = 413
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 208 DLEVDKVVTTMMSLYVPSRQALPWSAVGKTKWSQGIIGEARGSRRPRTYFYSL 50
D VD ++ TM + + + A+P S+G A+G YFY+L
Sbjct: 267 DWNVDGIIRTMRTTRIEPQSAIPVEEQVSDAKSKGKEAFAKGDYLTAIYFYTL 319
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = -1
Query: 233 GRHAVGGDRPRSGQGGDDDDVLVRAVP-------TGAALVGR 129
G VGGDR + DDDD LV TGAA GR
Sbjct: 99 GSMVVGGDREEEEEEEDDDDDLVLVASTTSERDVTGAAAAGR 140
>09_02_0459 + 9566824-9567303
Length = 159
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 236 GGRHAV--GGDRPRSGQGGDDDDVL 168
GGR GG R R +GGDDD+ L
Sbjct: 7 GGRRRARGGGSRRREAEGGDDDNGL 31
>07_01_0993 -
8377720-8377800,8379924-8380406,8380622-8381132,
8381174-8381586
Length = 495
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 245 QSNGGRHAVGGDRPRSGQGGDDD-DVLVRAVP 153
+S+ GR G+ P G+GGDD D VR VP
Sbjct: 133 RSHSGRLIELGELPFPGRGGDDGLDERVRGVP 164
>05_06_0288 +
26954222-26954446,26954995-26955124,26955221-26955414,
26955638-26956273
Length = 394
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 224 AVGGDRPRSGQGGDDDDVLVRA-VPT 150
AV G GGDDDD+++ A +PT
Sbjct: 33 AVQGQADADNDGGDDDDIIIPAGMPT 58
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 239 NGGRHAVGG--DRPRSGQGGDDDDVLV 165
N G+ VG + R QGGDDDD +V
Sbjct: 50 NNGKRKVGDGEEEGRGSQGGDDDDDVV 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,523
Number of Sequences: 37544
Number of extensions: 206392
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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