Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    32   0.29 
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    32   0.29 
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.2  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    27   8.1  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    27   8.1  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      27   8.1  

>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 241  PMVVGMLWEVTDLEVDKVVTTMMSLYVPSRQALPWSAVGKTKWSQGIIGEARGSRR 74
            P++VG LW VTD E+D+ +  M+       ++L  + + K +     + EAR   R
Sbjct: 1067 PLIVGCLWTVTDGEIDRFLIRMIDDCFEDSKSL--TGIDKLRQLSEAMHEARSKAR 1120


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 241  PMVVGMLWEVTDLEVDKVVTTMMSLYVPSRQALPWSAVGKTKWSQGIIGEARGSRR 74
            P++VG LW VTD E+D+ +  M+       ++L  + + K +     + EAR   R
Sbjct: 1067 PLIVGCLWTVTDGEIDRFLIRMIDDCFEDSKSL--TGIDKLRQLSEAMHEARSKAR 1120


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 236 GGRHAVG-GDRPRSGQGGDDDDVLVRAVPTG 147
           GG  A G G   + G  GDDDDV V  V  G
Sbjct: 777 GGEAAAGSGGANKGGSDGDDDDVDVTDVEVG 807


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 236 GGRHAVG-GDRPRSGQGGDDDDVLVRAVPTG 147
           GG  A G G   + G  GDDDDV V  V  G
Sbjct: 777 GGEAAAGSGGANKGGSDGDDDDVDVTDVEVG 807


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 236 GGRHAVGGDRPRSGQGG 186
           GGR   GGDR R G GG
Sbjct: 707 GGRGGYGGDRGRGGYGG 723


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 236 GGRHAVGGDRPRSGQGG 186
           GGR   GGDR R G GG
Sbjct: 748 GGRGGYGGDRGRGGYGG 764


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 236 GGRHAVGGDRPRSGQGG 186
           GGR   GGDR R G GG
Sbjct: 707 GGRGGYGGDRGRGGYGG 723


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,050
Number of Sequences: 27780
Number of extensions: 158139
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)