Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    30   1.1  
At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma m...    27   5.8  
At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma m...    27   5.8  
At1g18810.1 68414.m02344 phytochrome kinase substrate-related co...    27   7.7  

>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 244  SPMVVGMLWEVTDLEVDKVVTTMMSLYVPSR 152
            SP +V  LW+VTD ++D+    ++  ++  R
Sbjct: 1638 SPAIVATLWDVTDRDIDRFGKALLEAWLQER 1668


>At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma
           membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
           to calcium-transporting ATPase 8, plasma membrane-type
           SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 281 IILHITNNS*NLQSNGGRHAVGG---DRPRSGQGGDDDDVLVRAVPTGA 144
           +I+   +NS  L+  GG   +       P  G  GDDDD+L R    G+
Sbjct: 122 VIMSKDHNSGALEQYGGTQGLANLLKTNPEKGISGDDDDLLKRKTIYGS 170


>At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma
           membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
           to calcium-transporting ATPase 8, plasma membrane-type
           SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 281 IILHITNNS*NLQSNGGRHAVGG---DRPRSGQGGDDDDVLVRAVPTGA 144
           +I+   +NS  L+  GG   +       P  G  GDDDD+L R    G+
Sbjct: 122 VIMSKDHNSGALEQYGGTQGLANLLKTNPEKGISGDDDDLLKRKTIYGS 170


>At1g18810.1 68414.m02344 phytochrome kinase substrate-related
           contains weak similarity to Swiss-Prot:Q9SWI1
           phytochrome kinase substrate 1 [Arabidopsis thaliana]
          Length = 387

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -2

Query: 214 VTDLEVDKVVTTMMSLYVPSRQALPWSAVGKTKWSQGIIGEARGSRRPRTYFYSLRSKPI 35
           V   ++ ++     S+Y PS  ++ WS V  +   Q +I +    +R       +++KP+
Sbjct: 270 VASSDLFEIENITSSVYEPSEASIGWSVVTGSMADQSVISDFDMMKRVTRNGPVVKTKPV 329

Query: 34  CG 29
            G
Sbjct: 330 IG 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,709,699
Number of Sequences: 28952
Number of extensions: 147902
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)