Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D02f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   0.71 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = +3

Query: 177 HIESSITSQNTSHASHIKKNYCLLFMIVSDLLMIVVKPTCHSHIIFLYLIY 329
           H+   +T  N      +   + + F+I++ ++ ++        I++L+L+Y
Sbjct: 228 HLSKLVTRFNEIFGLGLLLMFAVSFLIITQVIFVICVLVQSEKIVWLHLVY 278


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 CLLFMIVSDLLMIVVKPTCH 299
           C++FM+ S +++ VV    H
Sbjct: 280 CIMFMVASSVVLTVVVLNYH 299


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 CLLFMIVSDLLMIVVKPTCH 299
           C++FM+ S +++ VV    H
Sbjct: 280 CIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 CLLFMIVSDLLMIVVKPTCH 299
           C++FM+ S +++ VV    H
Sbjct: 280 CIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 CLLFMIVSDLLMIVVKPTCH 299
           C++FM+ S +++ VV    H
Sbjct: 280 CIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 240 CLLFMIVSDLLMIVVKPTCH 299
           C++FM+ S +++ VV    H
Sbjct: 280 CIMFMVASSVVLTVVVLNYH 299


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 174  FHIESSITSQNTSHASHIKKNYCLL 248
            F ++++IT   ++   HI K Y  L
Sbjct: 1299 FGVKTNITYDESTQEVHISKEYLQL 1323


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 174  FHIESSITSQNTSHASHIKKNYCLL 248
            F ++++IT   ++   HI K Y  L
Sbjct: 1299 FGVKTNITYDESTQEVHISKEYLQL 1323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,878
Number of Sequences: 336
Number of extensions: 2585
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)