Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    29   0.56 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   0.97 
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   1.7  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    27   2.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   5.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.0  

>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 179 MKRLKFKTSVNNYFTLPEATRAIQFSYYKNMRSLLFIFYI 60
           + +L F++   +   + EATRA++  Y K   SLL +F+I
Sbjct: 9   LTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFHI 48


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 209 CILRCNAAFYMKRLKFKTSVNNYFTLPEATRAIQFSY 99
           CI+  N  F  + L +  SV+ +  LP++T + Q S+
Sbjct: 346 CIIEDNHVFKYRHLPYLASVHPFSYLPDSTNSKQLSH 382


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 239 IVFFNVGGM*CILRCNAAFYMKRLKFKTSVNNYFTLPEA 123
           +V   VGG   I    AA+Y       T  N++FT+P A
Sbjct: 242 VVLIRVGGAFGIFSACAAWYNAMAGLATIENSFFTVPRA 280


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 173 VSYRKQHYISEYITCLPH*KK 235
           V+YR++H +++ ++ +PH KK
Sbjct: 53  VTYRQRHLLNDLVSMMPHSKK 73


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 165 FKSFHIESSITSQNTSHASHIKKN 236
           F+SFH ++ +   ++SH  H KK+
Sbjct: 230 FESFHPKNYLVRNSSSHPYHFKKS 253


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 440  LRYHENYF*NDRLSRNL 490
            LRY +NYF N +L++N+
Sbjct: 1151 LRYGDNYFYNIKLAKNM 1167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,830
Number of Sequences: 5004
Number of extensions: 38111
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)