Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical pr...    34   0.071
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical
           protein K06A1.2 protein.
          Length = 375

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = -1

Query: 239 IVFFNVGGM*CILRCNAAFYMKRLKFKTSVNNYFTLPEATRAIQFSYYKNMRSLLFIFYI 60
           +VF +VG + C++     FYMK +K+    N    +PE +R     + K++  LL +  I
Sbjct: 16  LVFGHVG-LSCVVLLLVTFYMKSVKYLPKYN--IVIPEESRMTTILWAKSLFLLLSLVTI 72

Query: 59  F**YRLNMLLNPRAEFGT 6
           +  +R   + +P+  F T
Sbjct: 73  YFPFRKVCMKHPKGVFTT 90


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 237 YCLLFMIVSDLLMIVVKPTCHSHII-FLYLIY 329
           +CL+FM  S L  I    TC +H + FL+  +
Sbjct: 13  FCLIFMCSSPLKKIFYSKTCFTHFLSFLFQFF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,180
Number of Sequences: 27780
Number of extensions: 205546
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)